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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcattggccaacaaataaccccttttggtaaagttacattttctcaatcaaataaccttttttgctacatgctcctgtagGTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATGTTTAGTCTTCATACATTAATCTTCACCACAGCACGTATTTTGGCTTTCATTCTCGTCAAA

Basic information

species Glycine max
transcript GLYMA02G13860.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193551607|gb|FK506824.1|FK506824
EST:     ACAGATGAGCTTTGCAACAACGGCTCCCCCAACTAGCCAAGATGTTGATG                         GTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATGTTTAGTCTTCA
genomic: ACAGATGAGCTTTGCAACAACGGCTCCCCCAACTAGCCAAGATGTTGATGgtatgcattg ... gctcctgtagGTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATGTTTAGTCTTCA
EST: gi|23728682|gb|BU762402.1|BU762402
EST:     ACAGATGAGCTTTGCAACAACGGCTCCCCCAACTAGCCAAGATGTTGATG                         GTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATGTTTAGTCTTCA
genomic: ACAGATGAGCTTTGCAACAACGGCTCCCCCAACTAGCCAAGATGTTGATGgtatgcattg ... gctcctgtagGTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATGTTTAGTCTTCA
EST: gi|193634623|gb|FK585210.1|FK585210
EST:     ACAGATGAGCTTTGCAACAACGGCTCCCCCAACTAGCCAAGATGTTGATG                         GTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATGTTTAGTCTTCA
genomic: ACAGATGAGCTTTGCAACAACGGCTCCCCCAACTAGCCAAGATGTTGATGgtatgcattg ... gctcctgtagGTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATGTTTAGTCTTCA
EST: gi|193559478|gb|FK510847.1|FK510847
EST:     ACAGATGAGCTTTGCAACAACGGCTCCCCCAACTAGCCAAGATGTTGATG                         GTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTT
genomic: ACAGATGAGCTTTGCAACAACGGCTCCCCCAACTAGCCAAGATGTTGATGgtatgcattg ... gctcctgtagGTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTT
EST: gi|51343443|gb|CO984176.1|CO984176
EST:     ACAGATGAGCTTTGCAACAACGGCTCCCCCAACTAGCCAAGATGTTGATG                         GTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATGTTTAGTCTTCA
genomic: ACAGATGAGCTTTGCAACAACGGCTCCCCCAACTAGCCAAGATGTTGATGgtatgcattg ... gctcctgtagGTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATGTTTAGTCTTCA
EST: gi|193698465|gb|FK641594.1|FK641594
EST:     ACAGATGAGCTTTGCAACAACGGCTCCCCCAACTAGCCAAGATGTTGATG                         GTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATGTTTAGTCTTCA
genomic: ACAGATGAGCTTTGCAACAACGGCTCCCCCAACTAGCCAAGATGTTGATGgtatgcattg ... gctcctgtagGTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATGTTTAGTCTTCA
EST: gi|7925661|gb|AW831687.1|AW831687
EST:     ACAGATGAGCTTTGCAACAACGGCTCCCCCAACTAGCCAAGATGTTGATG                         GTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATGTTTAGTCTTCA
genomic: ACAGATGAGCTTTGCAACAACGGCTCCCCCAACTAGCCAAGATGTTGATGgtatgcattg ... gctcctgtagGTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATGTTTAGTCTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtaaagttacattttctcaatcaaataaccttttttgctacatgctcctgtagGTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATGTTTAGTCTTCATACATTAATCTTCACCACAGCACGTATTTTGGCTTTCATTCTCGTCAAA
                        aaataac  putative branch site (score: 2)
                                            tgctcct  putative PPT
                        aaataacctttttt  TA-rich tract