1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaattttcttatgtttcgctccattaatcttgtaaaaatagggcagcaaacctaagggttattgttacttatgacatttgtttggattacacatttgaaggaattttatttttaaaaacaattttatgctttggctaattgtaatttgaaatactggttaatctttatctttacaattacttgtcagGCAATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCTACTGAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGG
species | Glycine max |
transcript | GLYMA02G07910.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAG GCAATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCTACTGAAATTEST: gi|193514452|gb|FK467940.1|FK467940
genomic: TACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAGgtaattttct ... tacttgtcagGCAATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCTACTGAAATT
EST: TACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAG GCAATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCTACTGAAATTEST: gi|193420636|gb|FK390559.1|FK390559
genomic: TACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAGgtaattttct ... tacttgtcagGCAATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCTACTGAAATT
EST: TACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAG GCAATGTGCAGGGAATAGCCGCTTTGTACEST: gi|209700024|gb|BW656205.1|BW656205
genomic: TACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAGgtaattttct ... tacttgtcagGCAATGTGCAGGGA-TAGCCGCTTTGTAC
EST: TACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAG GCAATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCTACTGAAATTEST: gi|193347893|gb|FK312785.1|FK312785
genomic: TACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAGgtaattttct ... tacttgtcagGCAATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCTACTGAAATT
EST: TACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAG GCAATGTGACAGGGATAGCCGCTTTGTACEST: gi|14011960|gb|BG726882.1|BG726882
genomic: TACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAGgtaattttct ... tacttgtcagGCAATGTG-CAGGGATAGCCGCTTTGTAC
EST: TACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAG GCAATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCTACTGAAATTEST: gi|193427201|gb|FK393451.1|FK393451
genomic: TACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAGgtaattttct ... tacttgtcagGCAATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCTACTGAAATT
EST: TACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAG GCAATGTGCAGGGATAGCCGCTTTGTACEST: gi|209728114|gb|BW655349.1|BW655349
genomic: TACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAGgtaattttct ... tacttgtcagGCAATGTGCAGGGATAGCCGCTTTGTAC
EST: ACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAG GCAATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCTACTGAAATTEST: gi|298187661|gb|HO034810.1|HO034810
genomic: ACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAGgtaattttct ... tacttgtcagGCAATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCTACTGAAATT
EST: TACTACATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAG GCAATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCTACTGAAATTEST: gi|254342218|gb|GR853355.1|GR853355
genomic: TACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAGgtaattttct ... tacttgtcagGCAATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCTACTGAAATT
EST: TACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAG GCAATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCTACTGAAATT
genomic: TACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAGgtaattttct ... tacttgtcagGCAATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCTACTGAAATT
ggctaattgtaatttgaaatactggttaatctttatctttacaattacttgtcagGCAATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCTACTGAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGG
ttaatctttatcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattttcttatgtttcgctccattaatcttgtaaaaatagggcagcaaacctaagggttattgttacttatgacatttgtttggattacacatttgaaggaattttatttttaaaaacaattttatgctttggctaattgtaatttgaaatactggttaatctttatctttacaattacttgtcagGCAATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCTACTGAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA