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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttacctcatttaggaaacattccaatgtccgtgtgattacgtaattacccttttccccaatgaccataagtgatgacctggtaacaactttttacttgacagCCAGAAAAGAGAAATCCTGGATTGACTCCAATGGATTGGGTCAAGTTTCTTGCATCTGCTATAGTTGGGCTG

Basic information

species Glycine max
transcript GLYMA02G07370.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G07370.1 (Glycine max), 3'ss of exon 9
lower sequence: AT3G19340.1 (Arabidopsis thaliana), 3'ss of exon 9
gtgagttacctcatttaggaaacattccaatgtccgtgtgattacgtaattacccttttccccaatgaccataagtgatgacctggtaacaactttttacttgacagCCAGAAAAGAGAAATCCTGGATTGACTCCAATGGATTGGGTCAAGTTTCTTGCATCTGCTATAGTTGGGCTG
|| |||| |     ||         ||   | ||| |    || | |   |    |||    | |  |    ||   | |      |||||    | |  |   ||||| || || ||||| |||||| |||||||||||||||||||||| |||||   ||||||  ||||||| |||
gtaagtttctgttcttg--------tcttctttcctt----ttgcatcgctggattttgtagcgaaaattgcaaacta-gctgcaataacattaatgtcttgtgcagCCTGAGAAAAGAAACCCTGGACTGACTCCAATGGATTGGGTCAAATTTCTAATATCTGCAGTAGTTGGTCTG

upper sequence: GLYMA02G07370.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv14s0068g01000.t01 (Vitis vinifera), 3'ss of exon 9
------------------------gtgagttacctcatttaggaaacattccaatgtccgtgtgattacgtaattacccttttccccaatgacc-------ataagtgatgacctgg-taacaactttttactt--gacagCCAGAAAAGAGAAATCCTGGATTGACTCCAATGGATTGGGTCAAGTTTCTTGCATCTGCTATAGTTGGGCTG
                         |       |||| | |     |||  ||  ||   |    ||        ||| ||||| |  |  |         | |  || | || ||  |   ||| |||| |||    ||||||||||||| |||||| || || ||||| ||||| |||||||||||  |||| |||||| |||||||||||
gtgagttcttgtctgctttctctcctcccccctctcactcactctccatctcag-gtatttaaagttttaattgcacctttttctctcaaaagttttctatacagctgttaacatgtcttgtaacattttcctttgagcagCCAGAAAAGAAAAATCCAGGTTTAACTCCGATGGACTGGGTCAAGTTCATTGCGTCTGCTGTAGTTGGGCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccttttccccaatgaccataagtgatgacctggtaacaactttttacttgacagCCAGAAAAGAGAAATCCTGGATTGACTCCAATGGATTGGGTCAAGTTTCTTGCATCTGCTATAGTTGGGCTG
                               tggtaac  putative branch site (score: 2)
                                        ctttttactt  putative PPT
                                      aacttttta  TA-rich tract