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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggctggcactagttctgctctttgctttgcatttgtattgtttgatgattttttatgtgcatcaatccaaataatattcgtctactttgtttaccgtgcattgaagtaagttttttctatatagGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAGAACTGCAGAAGATGGGATTTGAGGTTCTTGGGGATAATGATTCTCCAGT

Basic information

species Glycine max
transcript GLYMA02G07250.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G07250.1 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os11g31640.1 (Oryza sativa), 3'ss of exon 9
gtttggctggcactagttctgctctttgctttgcatttgtattgtttgatgattttttatgtgcatcaatccaaataatattcgtctactttgtttaccgtgcattgaagtaagttttttctatatagGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAGAACTGCAGAAGATGGGATTTGAGGTTCTTGGGGATAATGATTCTCCAGT
               || ||   |||| |||    || |     ||  |||    |  | |   ||| ||  || |  || |        || ||||   ||  ||  |        | ||| |  ||||||||||||||||||||  || || ||||| ||||| || ||||||||||| ||  |||||||||| ||||||||||| || || ||||| ||||||||
---------------gtactagccttttcttctgcttcgaccctttcaatg-cgctgcaggc-tatccatgtaagttttactttcaattcttatttattttggttttga--------tgtct-tgcagGTGCCCAGAAACTTGCACGCATCCGTGAGAACAGCAATTTCTTTAGGTCAGAGCTCAAGAAGATGGGTTTTGAGGTTCTCGGAGACAATGACTCTCCAGT

upper sequence: GLYMA02G07250.1 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os01g70380.1 (Oryza sativa), 3'ss of exon 9
gtttggctggcactagttctgctctttgctttgcatttgtattgtttgatgattttttatgtgcatca-atccaaataatat-tcgtctactttgtttaccgtgcatt---gaagtaagt-tttttctatatagGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAGAACTGCAGAAGATGGGATTTGAGGTTCTTGGGGATAATGATTCTCCAGT
                                                            ||  |||| | |    | || | |  | |  | ||| |   |   |||    | |||| | || ||||| ||||| ||| |||| ||||| || ||||||||||| ||||| || ||  | ||||| || ||||| ||||| ||||| |||||||| || ||||| || || ||
------------------------------------------------------------gtatatcagaacttgttgatttcttatttcttctgtctttaggaaattcctaatgtaattattgttctaaatagGGGCCAAGAAGCTTGCTCAGATTCGAGAGAACAGCAATTTCTTCCGTTCAGAGCTTCAGAAAATGGGTTTTGAAGTTCTTGGAGACAATGACTCGCCGGT

upper sequence: GLYMA02G07250.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G152888_T01 (Zea mays), 3'ss of exon 9
gtttggctggcactagttctgctctttgctttgcatttgtattgtttgatgattttttatgtgcatcaatccaaataatattcgtctactttgtttaccgtgcattgaagtaagttttttctatatagGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAGAACTGCAGAAGATGGGATTTGAGGTTCTTGGGGATAATGATTCTCCAGT
         | ||||   | |||  ||         |   | | ||||     |||| || |||| |  | |   |||| ||||  ||  |  ||     | | |||   |    |          ||||||||| |||||||| |  || || |||||||| || || ||||||||||| ||  |||||||||| |||||||||||||| || ||||| ||||| ||
---------gtactaaaccagcttctt---------taacactttttgcc--cttttcatttgcagctgtgc---taatgttcgattaaataattcttttttccttgtgatgtact--------gaagGTGCCCAAAAACTTGCTCGCATCCGCGAGAATAGTAATTTCTTTAGGTCAGAGCTCAAGAAGATGGGTTTTGAGGTTCTTGGTGACAATGACTCTCCTGT

upper sequence: GLYMA02G07250.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G030862_T01 (Zea mays), 3'ss of exon 8
gtttggctggcactagttctgctctttgctttgcatttgtattgtttgatgattttttatgtgcatcaatccaaataatattcgtctactttgtttaccgtgcattgaagtaagttttttctatatagGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAGAACTGCAGAAGATGGGATTTGAGGTTCTTGGGGATAATGATTCTCCAGT
             |   ||  || || | || ||   | |||  | ||   |  |   ||     |    |  ||||||  |  | |  ||  |||   |     |   |    | | ||   |  ||||||||||||||| || |  || || ||||| |||||||| || |||||||| ||  |||||||||| |||||||||||||| || || || ||||| ||
------------gtccctccccttttcg-ttcgcgactatat-atgtgtccaactagaata-atgttgtactgaataatccttttttttttgtttttttgcttgcttggg---atgtgttgcttgcagGTGCCCAGAAACTGGCGCGCATCCGTGAGAACAGCAACTTCTTCAGGTCAGAGCTCAAGAAGATGGGCTTTGAGGTTCTTGGTGACAACGACTCTCCTGT

upper sequence: GLYMA02G07250.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G055854_T01 (Zea mays), 3'ss of exon 7
-----------gtttggctggcactagttctgctctttgc-tttgcatttgtattg--------tttgatgattttttatgtgcatcaatccaaataatattcgtctac-tttgtttac---cgtgcattgaagtaagttttttct-------atata-----gGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAGAACTGCAGAAGATGGGATTTGAGGTTCTTGGGGATAATGATTCTCCAGT
           ||||   |  ||||  || ||| |||| | ||||||  ||| ||         ||  || ||| ||| |        ||  |   ||  | |    |   ||| |  |    || |  | || ||| | |||| |       || ||     |||||||| |||||||| |  || || |||||||| || || || |||||||| ||  |||||||||| |||||||||||||| || ||||| ||||| ||
gtactaaaccagtttctttaacact--ttttgcccttttcatttgcagctgtgttaatgttcgattaaataattcttttttccttgtgatgtactgaagGTGCCCAAAAACTTGCTCGCGGATGTTCGATTAAATAATTCTTTTTTCCTTGTGATGTACTGAAGGTGCCCAAAAACTTGCTCGCATCCGCGAGAATAGTAATTTCTTCAGGTCAGAGCTCAAGAAGATGGGTTTTGAGGTTCTTGGTGACAATGACTCTCCTGT

upper sequence: GLYMA02G07250.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G142030_T01 (Zea mays), 3'ss of exon 9
gtttggctggcactagttctgctctttgctttgcatttgtattgtttgatgattttttatgtgcatcaatccaaataatattcgtctactttgtttaccgtgcattgaagtaagttttttctatatagGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAGAACTGCAGAAGATGGGATTTGAGGTTCTTGGGGATAATGATTCTCCAGT
         | ||||   | ||| |||  ||  || ||   || ||||     ||||  | |||| |  |     || | |||   ||  | ||||    | | |||   ||  ||          ||||||||| ||||||||||  || || |||||  | || || || ||||| |||||  |||||||||| |||||||||||||| || ||||||||||| ||
---------gtactaaaccagcttttt--ttaacactt---ttatttgtgcccttttcgtttgcagctgtgt---tagtgttcaattaaat-gtttttttttc-ttgtgatatatt--------gaagGTGCCCAAAAACTTGCACGCATCCGTGAGAACGGTAATTTCTTCAGGTCCGAACTCAAGAAGATGGGTTTTGAGGTTCTTGGCGACAATGATTCTCCTGT

upper sequence: GLYMA02G07250.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G357734_T03 (Zea mays), 3'ss of exon 14
gtttggctggcactagttctgctctttgctttgcatttgtattgtttgatgattttttatgtgcatcaatccaaataatattcgtctactttgtt-taccgtgcattgaagtaagttttttctatatagGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAGAACTGCAGAAGATGGGATTTGAGGTTCTTGGGGATAATGATTCTCCAGT
        || ||||   | | |  ||         |   | | ||||     |||| || |||| | ||     |||| ||||  ||  |  || |    | | |||   |    |          ||||||||| |||||||| |  || || |||||||| || || || |||||||| ||  |||||||||| |||||||||||||| || ||||| ||||| ||
-------aggtactaaaccagtttctt---------taacactttttgcc--cttttcatttgcagctatgt---taatgttcgattaaataattctttttttccttgtgatgtact--------gaagGTGCCCAAAAACTTGCTCGCATCCGCGAGAATAGTAATTTCTTCAGGTCAGAGCTCAAGAAGATGGGTTTTGAGGTTCTTGGTGACAATGACTCTCCTGT

upper sequence: GLYMA02G07250.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G137556_T01 (Zea mays), 3'ss of exon 5
gtttggctggcactagttctgctctttgctttgcatttgtattgtttgatgattttt-tatgtgcatcaatccaaataatattcgtctactttgtttaccgtgcattgaagtaagttttttctatatagGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAGAACTGCAGAAGATGGGATTTGAGGTTCTTGGGGATAATGATTCTCCAGT
        || ||||   | | |  ||        ||||   | ||   |  |  || | |     |      |||||||  |  | | | ||||      || | |||||                  ||||||| |||||||| || || || |||||||| || || || |||||||| ||  |||||||||  |||||||||||||| || ||||| ||||| ||
-------aggtactaaaccagtttctttaacactttttgcccttttcatttgtagttgtgttaatgttcgattaaataattctttttttccttgtg----atgtactgaag-

upper sequence: GLYMA02G07250.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G067257_T01 (Zea mays), 3'ss of exon 10
gtttggctggcactagttctgctctttgctttgcatttgtattgtttgatgattttttatgtgcatcaatccaaataatattcgtctactttgtt-taccgtgcattgaagtaagttttttctatatagGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAGAACTGCAGAAGATGGGATTTGAGGTTCTTGGGGATAATGATTCTCCAGT
        || ||||   | | |  ||         |   | | ||||     |||| || |||| |  |     |||| ||||  ||  |  || |    | | |||   |    |          ||||||||| |||||||| |  || || |||||||| || || || |||||||| ||  |||||||||| |||||||||||||| || ||||| ||||| ||
-------aggtactaaaccagtttctt---------taacactttttgcc--cttttcatttgcagctgtgt---taatgttcgattaaataattctttttttccttgtgatgtact--------gaagGTGCCCAAAAACTTGCTCGCATCCGCGAGAATAGTAATTTCTTCAGGTCAGAGCTCAAGAAGATGGGTTTTGAGGTTCTTGGTGACAATGACTCTCCTGT

upper sequence: GLYMA02G07250.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM5G891276_T01 (Zea mays), 3'ss of exon 6
gtttggctggcactagttctgctctttgctttgcatttgtattgtttgatgattttttatgtgcatcaatccaaataatattcgtctactttgtttaccgtgcattgaagtaagttttttctatatagGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAGAACTGCAGAAGATGGGATTTGAGGTTCTTGGGGATAATGATTCTCCAGT
         | ||||   | | |  ||         |   | | ||||     |||| || ||||    |     |||| || |  ||  |  ||     | | |||   |    |          ||||||||| |||||||| |  ||  | |||||||| || || || |||||||| ||  |||||||||| |||||||||||||| |||||||| ||||  ||
---------gtactaaaccagtttctt---------taacactttttgcc--cttttcatttgcagttgtgt---taatgtttgattaaataattattttttccttgtgatgtact--------gaagGTGCCCAAAAACTTGCTCGCATCTGCGAGAATAGTAATTTCTTCAGGTCAGAGCTCAAGAAGATGGGTTTTGAGGTTCTTGGTGATAATGACTCTCATGT

upper sequence: GLYMA02G07250.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G010202_T02 (Zea mays), 3'ss of exon 8
gtttggctggcactagttctgctctttgctttgcatttgtattgtttgatgattttttatgtgcatcaatccaaataatattcgtctactttgtttaccgtgcattgaagtaa-gttttttctatatagGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAGAACTGCAGAAGATGGGATTTGAGGTTCTTGGGGATAATGATTCTCCAGT
                              |   |  |  |   ||  |   | ||  |  |  | || |     | ||| |   || | ||||| |   ||  || | ||||   || |||||  |||| ||| |||| || || |||||||||||||| ||||| || ||  | || || || ||||| ||||| |||||||||||||| ||||||||||| || ||
-----------------------------gtacaacataaagaattccaaattcttacacct-taccagtttc--ttatactt-cctgccttgttga--atgtcttaatgtaacaattgttctaattagGGGCCAAGAAGCTCGCTCAAATTCGAGAGAACAGCAATTTCTTCCGCTCGGAGCTTCAGAAAATGGGTTTTGAGGTTCTTGGAGATAATGATTCACCTGT

upper sequence: GLYMA02G07250.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G370377_T01 (Zea mays), 3'ss of exon 11
-----------gtttggctggcactagttctgctctttgc-tttgcatttgtattg--------tttgatgattttttatgtgcatcaatcca--aataatattcgtctactttgtttac---cgtgcattgaagtaagttttttct-------atata-----gGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAGAACTGCAGAAGATGGGATTTGAGGTTCTTGGGGATAATGATTCTCCAGT------------------------------------
           ||||   |  ||||  || ||| |||| | ||||||  ||| ||         ||  || ||| ||| |        ||  |  ||   |   |    |||| | |  |    || |  | || ||| | |||| |       || ||     |||||||| |||||||| |  || ||    |      | || || |||||||| ||  |||||||||| |||||||||||||| || ||||| ||||| ||                                    
gtactaaaccagtttctttaacact--ttttgcccttttcatttgcagctgtgttaatgttcgattaaataattcttttttccttgtgatgtactaaaggtgcccaaaaactt-gctcgcggatgttcgattaaataattcttttttccttgtgatgtactgaaggtgcccaaaaacttgctcgcatccggctaag-

upper sequence: GLYMA02G07250.1 (Glycine max), 3'ss of exon 9
lower sequence: AT5G23670.1 (Arabidopsis thaliana), 3'ss of exon 9
gtttggctggcactag-ttctgctctttgctttgcatttgtattgtttgatgattttttatgtgcatcaatccaaataatattcgtctactttgtttaccgtgcattgaagtaagttttttctatatagGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAGAACTGCAGAAGATGGGATTTGAGGTTCTTGGGGATAATGATTCTCCAGT
         | ||| | || |  |  |  |  ||   ||   | |  | ||     |   || ||| ||||| ||  |      | || | |    ||             |       | ||  | ||| || || || || |||  ||| || ||||| |||||||||||  || | || ||||||||||||||||||||||| ||||| || |||||||| |||||
---------gtactcgattttttttctcaccgtgtcattaattggcctcatttgggtcactgagca-caatctaatcaggtcatgact-cataacctaaaaactcccattcttctcaaatactgaacagGGGCACAAAAGCTAGCAAGAATACGTGAGAACAGCAACTTTTTCCGGGCTGAGCTGCAGAAGATGGGATTTGAGGTACTTGGAGACAATGATTCCCCAGT

upper sequence: GLYMA02G07250.1 (Glycine max), 3'ss of exon 9
lower sequence: AT3G48780.1 (Arabidopsis thaliana), 3'ss of exon 9
gtttggctggcactagttctgctctttgctttgcatttgtattgtttgatgattttttatgtgcatcaatccaaataatattcgtctactttgtttaccgtgcattgaagtaagttttt-----tctatatagGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAGAACTGCAGAAGATGGGATTTGAGGTTCTTGGGGATAATGATTCTCCAGT
                                           || |  ||||   |||| |       | ||  |   | || | | || | |   |   | | |     |  ||| |      ||    ||| || || ||  | |||  |||  | ||||| ||||||||||| ||| | ||  ||||||||||||| ||||| |||||||| || |||||||| |||||
-------------------------------------------gtatcttgatagcttatttttgctctttcagctgtaactcttttgctctatgagcttcgtaatctcaaacttttataatcacctgggcagGGGCACAAAAGTTAGCAAGAATAAGGGAGAACAGCAACTTTTTCAGGGCTGAGTTGCAGAAGATGGGGTTTGAAGTTCTTGGAGACAATGATTCACCAGT

upper sequence: GLYMA02G07250.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv14s0068g01300.t01 (Vitis vinifera), 3'ss of exon 9
gtttggctggcactagttctgctctttgctttgcatttgtattgtttgatgattttttatgtgcatcaatccaaataatattcgtctactttgtttaccgtgcattgaagtaagttttt-tctatatagGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAGAACTGCAGAAGATGGGATTTGAGGTTCTTGGGGATAATGATTCTCCAGT
  | || |   |  | |  |      ||||| |  ||    |   ||  ||| | |||| ||       | || |   | | | | | ||||  ||    |  |||  |||    || | || || |||| ||||| |||||||||||||| || ||||||||||||||||| ||||||||||||||||  ||||| ||||||||||||||||||||||| ||||||||
-gtaggataa-ataaatcttctgtcatgcttggttttaacttctattcttgaatctttaggt-------ttcagac--tctccat-tgctttaattgtttttgattttagtgctcttgtgtccatgtagGAGCCCAAAAACTTGCACAAATACGTGAGAATAGCAACTTTTTCAGGTCAGAACTGCAGAGCATGGGTTTTGAGGTTCTTGGGGATAATGACTCTCCAGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51343322|gb|CO984055.1|CO984055
EST:     AATAATATCATCCATAAGAGTTATTCTTGGAGAGGATGGCTCCAATAGAG                         GTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAG
genomic: AATAATATCATCCATAAGAGTTATTCTTGGAGAGGATGGCTCCAATAGAGgtttggctgg ... ttctatatagGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAG
EST: gi|208059569|gb|GD860329.1|GD860329
EST:     AATAATATCATCCATAAGAGTTATTCTTGGAGAGGATGGCTCCAATAGAG                         GTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAG
genomic: AATAATATCATCCATAAGAGTTATTCTTGGAGAGGATGGCTCCAATAGAGgtttggctgg ... ttctatatagGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAG
EST: gi|21677293|gb|BQ629644.1|BQ629644
EST:     AATAATATCATCCATAAGAGTTATTCTTGGAGAGGATGGCTCCAATAGAG                         GTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAG
genomic: AATAATATCATCCATAAGAGTTATTCTTGGAGAGGATGGCTCCAATAGAGgtttggctgg ... ttctatatagGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAG
EST: gi|17519162|gb|BM188204.1|BM188204
EST:     AATAATATCATCCATAAGAGTTATTCTTGGAGAGGATGGCTCCAATAGAG                         GTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAG
genomic: AATAATATCATCCATAAGAGTTATTCTTGGAGAGGATGGCTCCAATAGAGgtttggctgg ... ttctatatagGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAG
EST: gi|208219363|gb|GE020153.1|GE020153
EST:     AATAATATCATCCATAAGAGTTATTCTTGGAGAGGATGGCTCCAATAGAG                         GTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAG
genomic: AATAATATCATCCATAAGAGTTATTCTTGGAGAGGATGGCTCCAATAGAGgtttggctgg ... ttctatatagGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAG
EST: gi|213587414|gb|DB955538.1|DB955538
EST:     AATAATATCATCCATAAGAGTTATTCTTGGAGAGGATGGCTCCAATAGAG                         GTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAG
genomic: AATAATATCATCCATAAGAGTTATTCTTGGAGAGGATGGCTCCAATAGAGgtttggctgg ... ttctatatagGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAG
EST: gi|6454129|gb|AW184877.1|AW184877
EST:     AATAATATCATCCATAAGAGTTATTCTTGGAGAGGATGGCTCCAATAGAG                         GTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAG
genomic: AATAATATCATCCATAAGAGTTATTCTTGGAGAGGATGGCTCCAATAGAGgtttggctgg ... ttctatatagGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAG
EST: gi|15812369|gb|BI784644.1|BI784644
EST:     CTCCAATAGAG                         GTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAG
genomic: CTCCAATAGAGgtttggctgg ... ttctatatagGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAG
EST: gi|15200443|gb|BI424352.1|BI424352
EST:     AATAATATCATCCATAAGAGTTATTCTTGGAGAGGATGGCTCCAATAGAG                         GTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAG
genomic: AATAATATCATCCATAAGAGTTATTCTTGGAGAGGATGGCTCCAATAGAGgtttggctgg ... ttctatatagGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataatattcgtctactttgtttaccgtgcattgaagtaagttttttctatatagGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAGAACTGCAGAAGATGGGATTTGAGGTTCTTGGGGATAATGATTCTCCAGT
                                         ttttttctat  CT-rich tract
                                     taagttttttctatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttggctggcactagttctgctctttgctttgcatttgtattgtttgatgattttttatgtgcatcaatccaaataatattcgtctactttgtttaccgtgcattgaagtaagttttttctatatagGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAGAACTGCAGAAGATGGGATTTGAGGTTCTTGGGGATAATGATTCTCCAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG