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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tccttataatctgttttttttatatagtaaactatattttaaatcataacgagttataccgtactaaggtacatttttgtttttatttttcatgactcagATTTGGGGTATGGGAAGCAGCAAAATGGGTTGCACGAGTTCGTGATCTCTCAGTTTACGACCCAAAGCGGCCAATATTGCTGAACTTGACCACAGATTTA

Basic information

species Glycine max
transcript GLYMA02G06940.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06940.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G065665_T01 (Zea mays), 3'ss of exon 9
-tccttataatctgttttttttatatagtaaactatattttaaatcataacgagttataccgtactaaggtacattt-ttgtttttatttttcatgactcagATTTGGGGTATGGGAAGCAGCAAAATGGGTTGCACGAGTTCGTGATCTCTCAGTTTACGACCCAAAGCGGCCAATATTGCTGAACTTGACCACAGATTTA
 |  | |     | ||  ||  ||||| |  | |     || | |||  ||   ||||    | ||    | ||  | ||  ||  ||||  ||      || ||||| |||||||| ||||||||||||||||||  ||| |||||  |  |    || || ||| || ||||  || | || ||| |||| |||||| | 
ttattcagttattcttgcttccatatattccatttgtacttgattca--actttttatcaaatgcttgaattcaactatttgttgcatttgccaaatgctagGTTTGGTGTATGGGAGGCAGCAAAATGGGTTGCAAAAGTCCGTGAATTTACTCAATATGATCCAGAGAGGCCGGTAATTCTCAACCTGACAACAGATGTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataacgagttataccgtactaaggtacatttttgtttttatttttcatgactcagATTTGGGGTATGGGAAGCAGCAAAATGGGTTGCACGAGTTCGTGATCTCTCAGTTTACGACCCAAAGCGGCCAATATTGCTGAACTTGACCACAGATTTA
 tcataac  putative branch site (score: 2)
                            tttttgtttttatttt  putative PPT
                        tacatttttgttttta  TA-rich tract