Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   
13  
 5'  3'   
14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatacacagatccacttaaatatgcaagtgatcaattgcataattgcctactgaatttataataattgcatggcagGATATGCTGGATCCACGTTGTCAGAACTCTACCTCCTTCACTCATTCCAGATATCCATATTCCTCAGTTTATGGTG

Basic information

species Glycine max
transcript GLYMA02G06160.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21888118|gb|BQ741331.1|BQ741331
EST:     AATTTAGTGTTTCTTTCAGAAATGGTGGAACACAGGGCTCTTCATCCTCA                         GATATGCTGGATCCACGTTGTCAGAACTCTACCTCCTTCACTCATTCCAGA
genomic: AATTTAGTGTTTCTTTCAGAAATGGTGGAACACAGGGCTCTTCATCCTCAgtaagtatac ... tgcatggcagGATATGCTGGATCCACGTTGTCAGAACTCTACCTCCTTCACTCATTCCAGA
EST: gi|193320112|gb|FK285997.1|FK285997
EST:     AATTTAGTGTTTCTTTCAGAAATGGTGGAACACAGGGCTCTTCATCCTCA                         GATATGCTGGAT
genomic: AATTTAGTGTTTCTTTCAGAAATGGTGGAACACAGGGCTCTTCATCCTCAgtaagtatac ... tgcatggcagGATATGCTGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcaagtgatcaattgcataattgcctactgaatttataataattgcatggcagGATATGCTGGATCCACGTTGTCAGAACTCTACCTCCTTCACTCATTCCAGATATCCATATTCCTCAGTTTATGGTG
                           tactgaatttataata  TA-rich tract