Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtataaaagaaaaccaacaagcatcttactttagaaatgtaaaattgcttttggaaactatcatatctttatcttttttccccttctcagGATAAGCATAATCCACACCTGGAGCTTACACTTAGTACTCGAAAGAAGATATCATCAATTTTAGAACATCTAAACCGTAAATGGGGTAATTCAAGCATAG

Basic information

species Glycine max
transcript GLYMA02G05420.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05420.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G085427_T02 (Zea mays), 3'ss of exon 9
-------gtgagtataaaagaaaaccaacaagcatcttactttagaaatgtaaaattgcttttggaaactatcatatctttatcttttttccccttctcagGATAAGCATAATCCACACCTGGAGCTTACACTTAGTACTCGAAAGAAGATATCATCAATTTTAGAACATCTAAACCGTAAATGGGGTAATTCAAGCATAG
        |  ||||              |    | ||  | |        |   |||         |  || | ||  |    |||| ||| ||| ||||||| | |||||||| || || ||||| ||| | ||  || ||||||| ||||||||  |  |||||||||||||||| ||||||||||| |||| ||| |
aacttttctttgtatctggtttgggtctgagttgttttgttctgttctccaatctttgagcaatttgaacattacatggt-gctttttctcctcttatcagGATGACCATAATCCTCATCTAGAGCTCACATTAAGCTCTAGAAAGAAAATATCATCTGTGCTAGAACATCTAAACCGAAAATGGGGTAACTCAAACATCG

upper sequence: GLYMA02G05420.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G152319_T01 (Zea mays), 3'ss of exon 9
---------gtgagtataaaagaaaaccaacaagcatc--ttactttagaaatgtaaaattgcttttggaaactatcatatctttatcttttttccccttctcagGATAAGCATAATCCACACCTGGAGCTTACACTTAGTACTCGAAAGAAGATATCATCAATTTTAGAACATCTAAACCGTAAATGGGGTAATTCAAGCATAG
          |   | |||  ||         ||      | | ||    ||| |   |    |||     |  || | || ||   ||||| ||| ||| ||||||| | |||||||| ||  | ||||| ||| | ||  || | ||||| ||||||||  |  |||||||||||||||| ||||||||||| |||| ||| |
cgcaaacttttctttgtaattgatttggggtcagttctgttcagttctccaatctgtgagcaattt----gaacattacatgtt-gccttttctcctcttatcagGATGACCATAATCCTCATTTAGAGCTCACATTAAGCTCTAGGAAGAAAATATCATCTGTGCTAGAACATCTAAACCGAAAATGGGGTAACTCAAACATCG

upper sequence: GLYMA02G05420.1 (Glycine max), 3'ss of exon 9
lower sequence: AT2G36960.3 (Arabidopsis thaliana), 3'ss of exon 9
gtgagtataaaagaaaaccaacaagcatctta-ctttagaaatgtaaaattgcttttggaaactatcatatctttatcttttttccccttctcagGATAAGCATAATCCACACCTGGAGCTTACACTTAGTACTCGAAAGAAGATATCATCAATTTTAGAACATCTAAACCGTAAATGGGGTAATTCAAGCATAG
|| ||  | ||| |  |   | |   ||   | |  ||    | | | |       ||||   |    |    ||| |  ||  | | ||  ||||||||||| ||||| || || || ||||| ||||||| ||| ||||||||||||||  |  | |||||||| || || |||||||| |  |||||    |
gtaagcttcaaataggaattatactgattggagcaataattttctgagacatgaaatggagcttgatctg---ttaacacttaacactttaacagGATAAGCACAATCCGCATCTTGAACTTACTCTTAGTAATCGCAAGAAGATATCATCTGTACTTGAACATCTCAATCGCAAATGGGGAAGCTCAAGTTGTG

upper sequence: GLYMA02G05420.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv08s0040g01460.t01 (Vitis vinifera), 3'ss of exon 8
gtgagtataaaagaaaaccaacaagcatcttactt-tagaaatgta----------------aaattgcttttggaaact---atcatatctttatcttttttccccttctcagGATAAGCATAATCCACACCTGGAGCTTACACTTAGTACTCGAAAGAAGATATCATCAATTTTAGAACATCTAAACCGTAAATGGGGTAATTCAAGCATAG
|| |||| | ||| ||| ||       | || | | ||||| || |                ||   |   |  |||| |   |  | || |||   |  |   |  ||| ||||||||||||||||| ||||||||||||||  | |||||||| || || ||||||||| |||| |||||||| |  || |||||||| |||||  ||||||
gtaagtagagaaggaaatcattttagttgttccatgtagaattggagttttaacggatggataagcagtaatcagaaatttaaaggaaatatttggatgatcatcttttcacagGATAAGCATAATCCTCACCTGGAGCTTACTTTAAGTACTCGTAAAAAAATATCATCAGTTTTGGAACATCTTACTCGCAAATGGGGCAATTCTGGCATAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgtaaaattgcttttggaaactatcatatctttatcttttttccccttctcagGATAAGCATAATCCACACCTGGAGCTTACACTTAGTACTCGAAAGAAGATATCATCAATTTTAGAACATCTAAACCGTAAATGGGGTAATTCAAGCATAG
                      ctatcatatctttatc  CT-rich tract
                       tatcatatctttatct  TA-rich tract