1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gctcagtactacgcttgactagccttttaaaattcaaaacactttgtattttggtatattcctgcaatactaacagttttttgattgtgctgtaaatcagCCACAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAATCTTAATAGTCTCATTGTGGTTTTATTTGTAGTATTCCTTTGGTAGGCA
species | Glycine max |
transcript | GLYMA02G05250.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG CCACAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAAEST: gi|207736317|gb|GD710796.1|GD710796
genomic: ATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgtaggttttc ... tgtaaatcagCCACAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAA
EST: ATGATCCATCTGTCAAAGATTTGCTGGCTTCCTTGCAAAATCAGTCTGAG CCTCAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAAEST: gi|254335038|gb|GR844823.1|GR844823
genomic: ATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgtaggttttc ... tgtaaatcagCCACAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAA
EST: -TGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG CCACAGCAGAAGAATGAAGACAAGCCACCAAATEST: gi|207802077|gb|GD774273.1|GD774273
genomic: ATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgtaggttttc ... tgtaaatcagCCACAGCAGAAGAATGAAGACAAGCCACCAAAT
EST: ATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG CCACAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAAEST: gi|213602974|gb|DB974139.1|DB974139
genomic: ATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgtaggttttc ... tgtaaatcagCCACAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAA
EST: ATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG CCACAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAAEST: gi|254335039|gb|GR844824.1|GR844824
genomic: ATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgtaggttttc ... tgtaaatcagCCACAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAA
EST: ATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG CCACAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAAEST: gi|308099085|gb|HO760926.1|HO760926
genomic: ATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgtaggttttc ... tgtaaatcagCCACAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAA
EST: ATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG CCACAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAAEST: gi|31470062|gb|CD412090.1|CD412090
genomic: ATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgtaggttttc ... tgtaaatcagCCACAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAA
EST: ATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG CCACAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAA
genomic: ATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgtaggttttc ... tgtaaatcagCCACAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAA
gtattttggtatattcctgcaatactaacagttttttgattgtgctgtaaatcagCCACAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAATCTTAATAGTCTCATTGTGGTTTTATTTGTAGTATTCCTTTGGTAGGCA
ttttttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctcagtactacgcttgactagccttttaaaattcaaaacactttgtattttggtatattcctgcaatactaacagttttttgattgtgctgtaaatcagCCACAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAATCTTAATAGTCTCATTGTGGTTTTATTTGTAGTATTCCTTTGGTAGGCA
- - - - - - gcttgac
- - - - - - - - - - -gcctttt
- - - - - - - - - - - - - - - - - caaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gattgtg