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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgactctacatgtaaggtgttcatacaaattgtcacctcttcaatttttgctatagcttcactgatgatgcttttcttttatcctgattttcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT

Basic information

species Glycine max
transcript GLYMA02G04320.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G04320.2 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os07g01760.1 (Oryza sativa), 3'ss of exon 7
tgactctacatgtaaggtgttcatacaaattgtcacctcttcaatttttgctatagcttcact-gatgatgcttttcttttat-cctgattttcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT
   |     ||||||| | ||  |   || | |      |   |    | | ||   |    | | |  || | |  ||   | ||| ||||  | |  |||||||| || |||||||||||||||||||||||  |||| |||||||||||||| |  || || |||
--tcatgtaatgtaagattttactttgaagtttggatagtagcacagataccatttttctgtttgcttgtgatctaattacgttcctcatttcatatgacagACAGTAGACGAGATCTACAAGGTTGCATCAATCGCACTCAGTCCAAATGTTCCTGGGCAGATCTTT

upper sequence: GLYMA02G04320.2 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM5G840582_T01 (Zea mays), 3'ss of exon 8
tgactctacatgtaaggtgttcatacaaattgtcacctcttcaatttttgc-tatagcttcactga---tgatgcttttcttttatcctgattttcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT
     ||| ||   |      ||     | |||||  |  |  ||   ||  ||||  ||         ||| | |   | ||  | |  ||||    ||||||||||| |||||||||||||||||||||||||||  ||| ||||| |||||||| |  ||||| |||
---tgctagattctattgtgacactttgaatgtcattttctggatacctgaatataattttttaaggtctgacggtagccattctttc-aatttgagcttgcagACAGTAGATGAGATCTACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20497753|gb|BQ272683.1|BQ272683
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|15204829|gb|BI427597.1|BI427597
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|17518503|gb|BM187545.1|BM187545
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|120529136|gb|EH257270.1|EH257270
EST:     TGGATATTTGGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: TGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|13125648|gb|BG316218.1|BG316218
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTNCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCA
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCA
EST: gi|23064228|gb|BU579001.1|BU579001
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|20498019|gb|BQ272949.1|BQ272949
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|23064069|gb|BU578842.1|BU578842
EST:     AATGTGGACAGCGAGGTGGATATTTT-TAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|22525213|gb|BU084024.1|BU084024
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|120534088|gb|EH262221.1|EH262221
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|22522320|gb|BU081131.1|BU081131
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|120529217|gb|EH257351.1|EH257351
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|22522821|gb|BU081632.1|BU081632
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|31561742|gb|CD487580.1|CD487580
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|10844815|gb|BF068017.1|BF068017
EST:     AATGTGGACAGCGAGGTGGATATTTCGAAATGACCACCATTCCTCCTGAG                         ACAGACGATGAGATCTACAA
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAA
EST: gi|20813120|gb|BQ297598.1|BQ297598
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|13482372|gb|BG511715.1|BG511715
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|120530295|gb|EH258429.1|EH258429
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|22525567|gb|BU084378.1|BU084378
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|13481734|gb|BG511077.1|BG511077
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|37996526|gb|CF808115.1|CF808115
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|208071978|gb|GD867698.1|GD867698
EST:     AAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|23064220|gb|BU578993.1|BU578993
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|193642786|gb|FK587716.1|FK587716
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|13481252|gb|BG510595.1|BG510595
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|23735380|gb|BU765969.1|BU765969
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|17519349|gb|BM188391.1|BM188391
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|20448749|gb|BQ252873.1|BQ252873
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|193715695|gb|FK648970.1|FK648970
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|7326948|gb|AW620746.1|AW620746
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAGATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|17400294|gb|BM177076.1|BM177076
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|6566266|gb|AW233945.1|AW233945
EST:     AATGTGGACAGCGAGGTGGATATTGTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTAC
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTAC
EST: gi|20812986|gb|BQ297464.1|BQ297464
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgctatagcttcactgatgatgcttttcttttatcctgattttcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT
                                    tcctgat  putative branch site (score: 3)
                       tgcttttcttttatcc  CT-rich tract
                          ttttcttttat  TA-rich tract