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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcctgctgtgtacttaatttttggcatgcatgtatgtatatatatatatatatatatatatatcatgacacataaagctgaccctgtattttggtaaatacctaccttgtgtgcgtagAGTGCAAATTCAAGCCAAAGCAACATGCTGATACTTCAAGAGAGTTGCACAGATTCAACTGGCTCATATGTAGTTTATGCTCCTGTGGATATTGTTGCTA

Basic information

species Glycine max
transcript GLYMA01G45070.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G45070.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv10s0116g00680.t01 (Vitis vinifera), 3'ss of exon 9
gtaagttcctgctgtgtacttaatttttggcatgcatgtatgtatatatatatatatatatatatatatcatgacacataaagctgaccctgtattttggtaaatacctaccttgtgtgcgtagAGTGCAAATTCAAGCCAAAGCAACATGCTGATACTTCAAGAGAGTTGCACAGATTCAACTGGCTCATATGTAGTTTATGCTCCTGTGGATATTGTTGCTA
|||||||||   ||  | |    |   || |    ||  |   |||   |||||| |  |  | |  |   ||  || ||||    |   || | ||    | | ||             ||||||||||||||| ||||| ||||||||||||||||| |||||||| ||||| ||| | || ||||| || ||  | || ||||| || || || ||||| |
gtaagttccatatgcctgccgtgtcaatgtcgatgatcaaatcataatcatatatctgaaactgt-cactgtgcgac-taaactaaagtgtgaacttcaaaataaact------------gtagAGTGCAAATTCGAGCCAGAGCAACATGCTGATACTACAAGAGAGCTGCACTGATCCTACCGGCTCTTACGTGATCTACGCTCCAGTTGACATCGTTGCCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9203975|gb|BE330199.1|BE330199
EST:     TAGCAAATGGTCGTGATCCCGGCAACTGTGTCTCTTTACTTCGAGTCAAT                         AGTGCAAATTCAAGCCAAAGCAACATGCTGATACTTCAAGAGAGTTGCACA
genomic: TAGCAAATGGTCGTGATCCCGGCAACTGTGTCTCTTTACTTCGAGTCAATgtaagttcct ... gtgtgcgtagAGTGCAAATTCAAGCCAAAGCAACATGCTGATACTTCAAGAGAGTTGCACA
EST: gi|15203170|gb|BI425938.1|BI425938
EST:     TAGCAAATGGTCGTGATCCCGGCAACTGTGTCTCTTTACTTCGAGTCAAT                         AGTGCAAATTCAAGCCAAAGCAACATGCTGATACTTCAAGAGAGTTGCACA
genomic: TAGCAAATGGTCGTGATCCCGGCAACTGTGTCTCTTTACTTCGAGTCAATgtaagttcct ... gtgtgcgtagAGTGCAAATTCAAGCCAAAGCAACATGCTGATACTTCAAGAGAGTTGCACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgacacataaagctgaccctgtattttggtaaatacctaccttgtgtgcgtagAGTGCAAATTCAAGCCAAAGCAACATGCTGATACTTCAAGAGAGTTGCACAGATTCAACTGGCTCATATGTAGTTTATGCTCCTGTGGATATTGTTGCTA
            agctgac  putative branch site (score: 3)
                       tattttggtaaata  TA-rich tract