1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttatctacctagtataccgatgataaattgatgatcattgtatttctttcttctcgtttatattgatgatcaatatggttcttatgtctacattctacagTCAAGGAAAATACAAGAAAGTGGTTGGAAGCCTAGATGGTTCCGAAGAGAAGGTGAAAATGGAACGTTTCGATACGTTGGTGGGTATTGGGAGGCGAGAG
species | Glycine max |
transcript | GLYMA01G41940.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGAAAAGCGGCAGAGAATG TCAAGGAAAATACAAGAAAGTGGTTGGAAGCCTAGATGGTTCCGAAGAGAAEST: gi|151393208|gb|EV263083.1|EV263083
genomic: GGAAAAGCGGCAGAGAATGgtacgtcttt ... cattctacagTCAAGGAAAATACAAGAAAGTGGTTGGAAGCCTAGATGGTTCCGAAGAGAA
EST: ACGAGAAGGCCAATTTGGAGAAACAAAGGTTGGAAAAGCGGCAGAGAATG TCAAGGAAAATACAAGAAAGTGGTTGGAAGCCTAGATGGTTCCGAAGAGAAEST: gi|192316196|gb|FK011611.1|FK011611
genomic: ACGAGAAGGCCAATTTGGAGAAACAAAGGTTGGAAAAGCGGCAGAGAATGgtacgtcttt ... cattctacagTCAAGGAAAATACAAGAAAGTGGTTGGAAGCCTAGATGGTTCCGAAGAGAA
EST: ACGAGAAGGCCAATTTGGAGAAACAAAGGTTGGAAAAGCGGCAGAGAATG TCAAGGAAAATACAAGAAAGTGGTTGGAAGCCTAGATGGTTCCGAAGAGAAEST: gi|58016065|gb|CX702807.1|CX702807
genomic: ACGAGAAGGCCAATTTGGAGAAACAAAGGTTGGAAAAGCGGCAGAGAATGgtacgtcttt ... cattctacagTCAAGGAAAATACAAGAAAGTGGTTGGAAGCCTAGATGGTTCCGAAGAGAA
EST: CGAGAAGGCCAATTTGGAGAAACAAAGGTTGGAAAAGCGGCAGAGAATG TCAAGGAAAATACAAGAAAGTGGTTGGAAGCCTAGATGGTTCCGAAGAGAAEST: gi|26267946|gb|CA819009.1|CA819009
genomic: CGAGAAGGCCAATTTGGAGAAACAAAGGTTGGAAAAGCGGCAGAGAATGgtacgtcttt ... cattctacagTCAAGGAAAATACAAGAAAGTGGTTGGAAGCCTAGATGGTTCCGAAGAGAA
EST: ACGAGAAGGCCAATTTGGAGAAACAAAGGTTGGAAAAGCGGCAGAGAATG TCAAGGAAAATACAAGAAAGTGGTTGGAAGCCTAGATGGTTCCGAAGAGAA
genomic: ACGAGAAGGCCAATTTGGAGAAACAAAGGTTGGAAAAGCGGCAGAGAATGgtacgtcttt ... cattctacagTCAAGGAAAATACAAGAAAGTGGTTGGAAGCCTAGATGGTTCCGAAGAGAA
ctttcttctcgtttatattgatgatcaatatggttcttatgtctacattctacagTCAAGGAAAATACAAGAAAGTGGTTGGAAGCCTAGATGGTTCCGAAGAGAAGGTGAAAATGGAACGTTTCGATACGTTGGTGGGTATTGGGAGGCGAGAG
tattgat putative branch site (score: 3)
tttatattgatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatctacctagtataccgatgataaattgatgatcattgtatttctttcttctcgtttatattgatgatcaatatggttcttatgtctacattctacagTCAAGGAAAATACAAGAAAGTGGTTGGAAGCCTAGATGGTTCCGAAGAGAAGGTGAAAATGGAACGTTTCGATACGTTGGTGGGTATTGGGAGGCGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - tgatgat