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...aataaacaacaatgcttgctggaatattttatgttttctaatgatccattaaccattatcaagcatgcaatactagccactacatttttttatcttgcagGAGGAAATCAAGATAACAAGTGTCACGATTTTTGTCAATCCTTACACAGAACCAGATGAGGGAGAAGAGCAGGATAATGCCAAAGAGAAGAATGCAGAGG
species | Glycine max |
transcript | GLYMA01G40170.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCCTAGCGGCAATGGAAAAGGTTCCTGTTGATGATGATGACCGGCCTCTG GAGGAAATCAAGATAACAAGTGTCACGATTTTTGTCAATCCTTACACAGAAEST: gi|57575167|gb|CX548142.1|CX548142
genomic: CCCTAGCGGCAATGGAAAAGGTTCCTGTTGATGATGATGACCGGCCTCTGgtgattcata ... tatcttgcagGAGGAAATCAAGATAACAAGTGTCACGATTTTTGTCAATCCTTACACAGAA
EST: CCCTAGCGGCAATGGAAAAGGTTCCTGTTGATGATGATGACCGGCCTCTG GAGGAAATCAAGATAACAAGTGTCACGATTTTTGTCAATCCTTACACAGAAEST: gi|58023281|gb|CX710022.1|CX710022
genomic: CCCTAGCGGCAATGGAAAAGGTTCCTGTTGATGATGATGACCGGCCTCTGgtgattcata ... tatcttgcagGAGGAAATCAAGATAACAAGTGTCACGATTTTTGTCAATCCTTACACAGAA
EST: CCCTAGCGGCAATGGAAAAGGTTCCTGTTGATGATGATGACCGGCCTCTG GAGGAAATCAAGATAACAAGTGTCACGATTTTTGTCAATCCTTACACAGAA
genomic: CCCTAGCGGCAATGGAAAAGGTTCCTGTTGATGATGATGACCGGCCTCTGgtgattcata ... tatcttgcagGAGGAAATCAAGATAACAAGTGTCACGATTTTTGTCAATCCTTACACAGAA
ccattaaccattatcaagcatgcaatactagccactacatttttttatcttgcagGAGGAAATCAAGATAACAAGTGTCACGATTTTTGTCAATCCTTACACAGAACCAGATGAGGGAGAAGAGCAGGATAATGCCAAAGAGAAGAATGCAGAGG
cattaac putative branch site (score: 2)
catttttttatctt putative PPT
tacatttttttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aataaacaacaatgcttgctggaatattttatgttttctaatgatccattaaccattatcaagcatgcaatactagccactacatttttttatcttgcagGAGGAAATCAAGATAACAAGTGTCACGATTTTTGTCAATCCTTACACAGAACCAGATGAGGGAGAAGAGCAGGATAATGCCAAAGAGAAGAATGCAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - aacaaca
- - - - - - -gcttgct
- - - - - - - - - - - - - - - - - - - - - - -ccattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccacta