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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtacctcttcaattaatttctgtttttggtcatgcatttaatttaaatggacaaaagatgattcaggaagcgcccattaaatttattagtaaccaacatccaagtggagtttaatcttttttccccctctgatcatgcagGTTCCTAGCAGCAGCAGCAACCGAGGCCGTATTGGAAGCGATCTTTCGTTATCAATGTCCGATCAACAACAATGGCAACAAGCCGGGCCTCCACATTTGT

Basic information

species Glycine max
transcript GLYMA01G39520.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9565599|gb|BE475108.1|BE475108
EST:     CACAAATGCCTCACAATTTCGCACATCATCTTCACCAACCAAGTTTTCAT                         GTTCCTAGCAGCAGCAGCAACCGAGGCCGTATTGGAAGCGATCTTTCGTTA
genomic: CACAAATGCCTCACAATTTCGCACATCATCTTCACCAACCAAGTTTTCATgtgggtacct ... gatcatgcagGTTCCTAGCAGCAGCAGCAACCGAGGCCGTATTGGAAGCGATCTTTCGTTA
EST: gi|21889648|gb|BQ742861.1|BQ742861
EST:     CACAAATGCCTCACAATTTCGCACATCATCTTCACCAACCAAGTTTTCAT                         GTTCCTAGCAGCAGCAGCAACCGAGGCCGTATTGGAAGCGATCTTTCGTTA
genomic: CACAAATGCCTCACAATTTCGCACATCATCTTCACCAACCAAGTTTTCATgtgggtacct ... gatcatgcagGTTCCTAGCAGCAGCAGCAACCGAGGCCGTATTGGAAGCGATCTTTCGTTA
EST: gi|21889407|gb|BQ742620.1|BQ742620
EST:     CACAAATGCCTCACAATTTCGCACATCATCTTCACCAACCAAGTTTTCAT                         GTTCCTAGCAGCAGCAGCAACCGAGGCCGTATTGTAAGCGATCTTTCGTTA
genomic: CACAAATGCCTCACAATTTCGCACATCATCTTCACCAACCAAGTTTTCATgtgggtacct ... gatcatgcagGTTCCTAGCAGCAGCAGCAACCGAGGCCGTATTGGAAGCGATCTTTCGTTA
EST: gi|31464382|gb|CD406410.1|CD406410
EST:     CACAAATGCCTCACAATTTCGCACATCATCTTCACCAACCAAGTTTTCAT                         GTTCCTAGCAGCAGCAGCAACCGAGGCCGTATTGGAAGCGATCTTTCGTTA
genomic: CACAAATGCCTCACAATTTCGCACATCATCTTCACCAACCAAGTTTTCATgtgggtacct ... gatcatgcagGTTCCTAGCAGCAGCAGCAACCGAGGCCGTATTGGAAGCGATCTTTCGTTA
EST: gi|19346682|gb|BM891562.1|BM891562
EST:     CACAAATGCCTCACAATTTCGCACATCATCTTCACCAACCAAGTTTTCAT                         GTTCCTAGCAGCAGCAGCAACCGAGGCCGTATTGGAAGC
genomic: CACAAATGCCTCACAATTTCGCACATCATCTTCACCAACCAAGTTTTCATgtgggtacct ... gatcatgcagGTTCCTAGCAGCAGCAGCAACCGAGGCCGTATTGGAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagtaaccaacatccaagtggagtttaatcttttttccccctctgatcatgcagGTTCCTAGCAGCAGCAGCAACCGAGGCCGTATTGGAAGCGATCTTTCGTTATCAATGTCCGATCAACAACAATGGCAACAAGCCGGGCCTCCACATTTGT
                        tttaatcttttttccc  CT-rich tract
                      agtttaatctttttt  TA-rich tract