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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagagacaataaaagatggcttgtgcttatttgcatgactgcatgttattctttgagtttgaatatgttttctaaaaattgtgaaacttttcttggaaattatgattgcttctaggcttgacatagatcttttgactttgttttcagTGAAAGAGCTTTGTTGAACCGCTTGATGTTAGAATTGCACAAGTTGGACAGTGATGTTCTTGTTGGACACAATATTTCTGGATTTGACCTGGATGTTCTT

Basic information

species Glycine max
transcript GLYMA01G39430.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39430.1 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os01g64820.1 (Oryza sativa), 3'ss of exon 8
gtagagacaataaaagatggcttgtgcttatttgcatgactgcatgttattctttgagtttgaatatgttttctaaaaattgtgaaacttttcttggaaattatgattgcttctaggcttgacatagatcttttgactttgttttcagTGAAAGAGCTTTGTTGAACCGCTTGATGTTAGAATTGCACAAGTTGGACAGTGATGTTCTTGTTGGACACAATATTTCTGGATTTGACCTGGATGTTCTT
                                                  |       | | | | | ||||||| || |  | | |  | |      || | || | || |          ||   | ||||||| | || | |||||||| | || ||||| |||||||||||| | ||  |   |||  | ||  | ||||| ||||| |||||||||||||||||||||||| |||| || |||
-------------------------------------------------gtggacacttctaactttcttttctataactgttaataactct------aactgtggtagcatt---------cactaaccttttgattctgctatcagTGAACGTGCATTGTTAAACCGCTTGATGATCGAGCTTAGCAAACTTGATTGCGATGTACTTGTGGGACACAATATTTCTGGATTTGACTTGGACGTCCTT

upper sequence: GLYMA01G39430.1 (Glycine max), 3'ss of exon 9
lower sequence: AT5G67100.1 (Arabidopsis thaliana), 3'ss of exon 8
gtagagacaataaaagatggcttgtgcttatttgcatgactgcatgttattctttgagtttgaatatgttttctaaaaattgtgaaacttttcttggaaattatgattgcttctaggcttgacatagatcttttgactttgttttcagTGAAAGAGCTTTGTTGAACCGCTTGATGTTAGAATTGCACAAGTTGGACAGTGATGTTCTTGTTGGACACAATATTTCTGGATTTGACCTGGATGTTCTT
                                 |  ||  ||||  |   |   ||| |  |  | |||||  | |   ||   | |  | | | | || | ||| | |||||   |    | ||   | ||     | |   | |||||||||||| ||| ||||||| ||| | || || ||  |||| |||||||||||| ||||||| ||||| |||||||| || ||||| ||||||||||||
---------------------------------gtgtg-ttgcagctctgttactgaata-ggctgtgtttg-tgatccttcacatatatctttggcaattcatgttggcttc---gtccaatattt-tgttccttttcttactgcagTGAAAGAGCATTGCTGAACCGATTGTTTTTGGAGTTAAACAAATTGGACAGTGATATTCTTGTGGGACATAATATTTCAGGTTTTGATCTGGATGTTCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggaaattatgattgcttctaggcttgacatagatcttttgactttgttttcagTGAAAGAGCTTTGTTGAACCGCTTGATGTTAGAATTGCACAAGTTGGACAGTGATGTTCTTGTTGGACACAATATTTCTGGATTTGACCTGGATGTTCTT
                                     ttttgac  putative branch site (score: 3)
                                           ctttgttttc  CT-rich tract
     aattatgatt  TA-rich tract