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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgcataatctactctcttgcctatgctttcagatgtctaaaaagtttttctaattttctaaagtccctgtcatgccttgtagattacaattcatcccttgattttcatctttccttactgcgacagACCTGCCCAAAAGCTGCAAAACACGGCGAGATGAAATTGCGAAGCATATTTGGCTTGGAATGGTCAGAGCCCTTGGTTACATTTGCACTTTCCTGTGGAA

Basic information

species Glycine max
transcript GLYMA01G39120.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39120.1 (Glycine max), 3'ss of exon 9
lower sequence: AT4G37080.2 (Arabidopsis thaliana), 3'ss of exon 9
gtaagtgcataatctactctcttgcctatgctttcagatgtctaaaaagtttttctaattttctaaagtccctgtcatgccttgtagattacaattcatcccttgattttcatctttccttactgcgacagACCTGCCCAAAAGCTGCAAAACACGGCGAGATGAAATTGCGAAGCATATTTGGCTTGGAATGGTCAGAGCCCTTGGTTACATTTGCACTTTCCTGTGGAA
                       |    ||| ||||  | | | ||  || |     |||   | ||      ||     ||| ||     || ||    |  || || | || ||           | |||| || || ||| |||||| ||| |  || |||| |   |  |||| |||||| ||||||||||||||||||||||| ||||| || ||  |||||||||
-----------------------gtaagtgccttcatttctttgaactgtatacaccattgaatcaaagtttggtt----cttata-----catttttctctctgcttcttatttt------gaaaaaaagACTTGTCCCAAAACTGCAACACATGAAGAAATGAGAGCTCATAGCACATTTGGATTGGAATGGTCAGAGCCCTTGGTCACATTCGCTCTCGCCTGTGGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgccttgtagattacaattcatcccttgattttcatctttccttactgcgacagACCTGCCCAAAAGCTGCAAAACACGGCGAGATGAAATTGCGAAGCATATTTGGCTTGGAATGGTCAGAGCCCTTGGTTACATTTGCACTTTCCTGTGGAA
                                        tccttac  putative branch site (score: 2)
                              ttttcatctttcctta  CT-rich tract
           attacaatt  TA-rich tract