1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...actttttctctcctagaagaagttgttgagttagtatctttgacaacttgtgctgttcatggacactgttgtttctaactatgacaattttctgttttagGCTGTTAAAATATTAAGGACAGATTATGAACTCTCTGATTTAGATATCCTTTATGCCGAGGGAGTTACTTCATCTAATGGGGTGGCTTGTGTGGAGTTTT
species | Glycine max |
transcript | GLYMA01G38890.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GAAGCGAATTAGAAATGCTGCCTAGTGTTGCCGGTTATTTCTTAGAGCGG GCTGTTAAAATATTAAGGACAGATTATGAACTCTCTGATTTAGATATCCTTEST: gi|22934032|gb|BU551171.1|BU551171
genomic: GAAGCGAATTAGAAATGCTGCCTAGTGTTGCCGGTTATTTCTTAGAGCGGgtaagataat ... tctgttttagGCTGTTAAAATATTAAGGACAGATTATGAACTCTCTGATTTAGATATCCTT
EST: GAAGCGAATTAGAAATGCTGCCTAGTGTTGCCGGTTATTTCTTAGAGCGG GCTGTTAAAATATTAAGGACAGATTATGAACTCTCTGATTTAGATATCCTTEST: gi|193367107|gb|FK330813.1|FK330813
genomic: GAAGCGAATTAGAAATGCTGCCTAGTGTTGCCGGTTATTTCTTAGAGCGGgtaagataat ... tctgttttagGCTGTTAAAATATTAAGGACAGATTATGAACTCTCTGATTTAGATATCCTT
EST: GAAGCGAATTAGAAATGCTGCCTAGTGTTGCCGGTTATTTCTTAGAGCGG GCTGTTAAAATATTAAGGACAGATTATGAACTCTCTGATTTAGATATCCTT
genomic: GAAGCGAATTAGAAATGCTGCCTAGTGTTGCCGGTTATTTCTTAGAGCGGgtaagataat ... tctgttttagGCTGTTAAAATATTAAGGACAGATTATGAACTCTCTGATTTAGATATCCTT
acttgtgctgttcatggacactgttgtttctaactatgacaattttctgttttagGCTGTTAAAATATTAAGGACAGATTATGAACTCTCTGATTTAGATATCCTTTATGCCGAGGGAGTTACTTCATCTAATGGGGTGGCTTGTGTGGAGTTTT
ttctaac putative branch site (score: 1)
ttttctgtttt putative PPT
aattttctgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actttttctctcctagaagaagttgttgagttagtatctttgacaacttgtgctgttcatggacactgttgtttctaactatgacaattttctgttttagGCTGTTAAAATATTAAGGACAGATTATGAACTCTCTGATTTAGATATCCTTTATGCCGAGGGAGTTACTTCATCTAATGGGGTGGCTTGTGTGGAGTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - -ctctcct
- - - - - - - - - - -gttgttg
- - - - - - - - - - - - - - - - - - - - tgacaac
- - - - - - - - - - - - - - - - - - - - - - - - - tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -catggac