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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttcattttttttttcttttccttttgggggtgggggtaagtggtattttgctccatttcctgtaatgctatcaattttctgattgtattgtttatccagCCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAATCTTTGAGAACCACTTTGCCCTGTATGGTTTTATTTTCTTGGTAGCATT

Basic information

species Glycine max
transcript GLYMA01G36990.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31305113|gb|CD390316.1|CD390316
EST:     ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG                         CCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
genomic: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgttagtcttt ... gtttatccagCCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
EST: gi|14990975|gb|BI316648.1|BI316648
EST:     ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG                         CCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
genomic: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgttagtcttt ... gtttatccagCCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
EST: gi|151396744|gb|EV266617.1|EV266617
EST:     ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG                         CCTCAACAGAAGAATGGCGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
genomic: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgttagtcttt ... gtttatccagCCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
EST: gi|10847418|gb|BF070105.1|BF070105
EST:     ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG                         CCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
genomic: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgttagtcttt ... gtttatccagCCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
EST: gi|16997110|gb|BM086482.1|BM086482
EST:     ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG                         CCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
genomic: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgttagtcttt ... gtttatccagCCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
EST: gi|192294443|gb|FG987372.1|FG987372
EST:     ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG                         CCTCAACAGAAGAATGACGACA-GCCATCAAACGAGGAGGAGAAGAAGTAA
genomic: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgttagtcttt ... gtttatccagCCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
EST: gi|13789154|gb|BG651745.1|BG651745
EST:     ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG                         CCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
genomic: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgttagtcttt ... gtttatccagCCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgctccatttcctgtaatgctatcaattttctgattgtattgtttatccagCCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAATCTTTGAGAACCACTTTGCCCTGTATGGTTTTATTTTCTTGGTAGCATT
                                ttctgat  putative branch site (score: 3)
                                              tttatcc  putative PPT
                                     attgtattgtttat  TA-rich tract