1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cttcattttttttttcttttccttttgggggtgggggtaagtggtattttgctccatttcctgtaatgctatcaattttctgattgtattgtttatccagCCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAATCTTTGAGAACCACTTTGCCCTGTATGGTTTTATTTTCTTGGTAGCATT
species | Glycine max |
transcript | GLYMA01G36990.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG CCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAAEST: gi|14990975|gb|BI316648.1|BI316648
genomic: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgttagtcttt ... gtttatccagCCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
EST: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG CCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAAEST: gi|151396744|gb|EV266617.1|EV266617
genomic: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgttagtcttt ... gtttatccagCCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
EST: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG CCTCAACAGAAGAATGGCGACAAGCCATCAAACGAGGAGGAGAAGAAGTAAEST: gi|10847418|gb|BF070105.1|BF070105
genomic: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgttagtcttt ... gtttatccagCCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
EST: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG CCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAAEST: gi|16997110|gb|BM086482.1|BM086482
genomic: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgttagtcttt ... gtttatccagCCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
EST: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG CCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAAEST: gi|192294443|gb|FG987372.1|FG987372
genomic: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgttagtcttt ... gtttatccagCCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
EST: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG CCTCAACAGAAGAATGACGACA-GCCATCAAACGAGGAGGAGAAGAAGTAAEST: gi|13789154|gb|BG651745.1|BG651745
genomic: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgttagtcttt ... gtttatccagCCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
EST: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG CCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
genomic: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgttagtcttt ... gtttatccagCCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
attttgctccatttcctgtaatgctatcaattttctgattgtattgtttatccagCCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAATCTTTGAGAACCACTTTGCCCTGTATGGTTTTATTTTCTTGGTAGCATT
ttctgat putative branch site (score: 3)
tttatcc putative PPT
attgtattgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcattttttttttcttttccttttgggggtgggggtaagtggtattttgctccatttcctgtaatgctatcaattttctgattgtattgtttatccagCCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAATCTTTGAGAACCACTTTGCCCTGTATGGTTTTATTTTCTTGGTAGCATT
cttcatt
- - - - - - - - - - ccttttg
- - - - - - - - - - - - - - gggtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgattg