1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...catttcactaaatgatagcaagtgttgtgcttgggaataatccatgttacatattatttttctgctgcaagagtattgacacgttgaatctattatgcagGTTGATAAGAATCTTTCTTTCCTCAATGGGTATGTTCAGCAGTCTTTAGAAAGGGGTGCTAAATCCTATATTCCTGAGGATGTGCGCACTGGAATGGGGA
species | Glycine max |
transcript | GLYMA01G35650.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTGTTGAAACAATAATGCCACGAGATGCAAGTTGTGAAGACATTGAG GTTGATAAGAATCTTTCTTTCCTCAATGGGTATGTTCAGCAGTCTTTAGAAEST: gi|208267061|gb|GE062386.1|GE062386
genomic: CTGTTGAAACAATAATGCCACGAGATGCAAGTTGTGAAGACATTGAGgttattgcta ... tattatgcagGTTGATAAGAATCTTTCTTTCCTCAATGGGTATGTTCAGCAGTCTTTAGAA
EST: AAGCTGTTGAAACAATAATGCCACGAGATGCAAGTTGTGAAGACATTGAG GTTGATAAGAATCTTTCTTTCCTCAATGGGTATGTTCAGCAGTCTTTAGAAEST: gi|208317481|gb|GE112314.1|GE112314
genomic: AAGCTGTTGAAACAATAATGCCACGAGATGCAAGTTGTGAAGACATTGAGgttattgcta ... tattatgcagGTTGATAAGAATCTTTCTTTCCTCAATGGGTATGTTCAGCAGTCTTTAGAA
EST: AAGCTGTTGAAACAATAATGCCACGAGATGCAAGTTGTGAAGACATTGAG GTTGATAAGAATCTTTCTTTCCTCA
genomic: AAGCTGTTGAAACAATAATGCCACGAGATGCAAGTTGTGAAGACATTGAGgttattgcta ... tattatgcagGTTGATAAGAATCTTTCTTTCCTCA
gttacatattatttttctgctgcaagagtattgacacgttgaatctattatgcagGTTGATAAGAATCTTTCTTTCCTCAATGGGTATGTTCAGCAGTCTTTAGAAAGGGGTGCTAAATCCTATATTCCTGAGGATGTGCGCACTGGAATGGGGA
tattgac putative branch site (score: 2)
atattatttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catttcactaaatgatagcaagtgttgtgcttgggaataatccatgttacatattatttttctgctgcaagagtattgacacgttgaatctattatgcagGTTGATAAGAATCTTTCTTTCCTCAATGGGTATGTTCAGCAGTCTTTAGAAAGGGGTGCTAAATCCTATATTCCTGAGGATGTGCGCACTGGAATGGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - -gcaagtg
- - - - - - - - - - - - - -tgcttgg
- - - - - - - - - - - - - - - - - - - - -ccatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacacg