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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgttgaactaaaaacacatatctgaatagtcaatattattttattttgaacactttgtttattaaaatttgtgtgcccatgcagAACACGTCTCCTGAATATAAGTTGCGTTTGTTGATGATTTATGCATCTGTCTATCCTGAAAAGTTTGAGGGTGATAAAGCTTCAAAGCTAATGCAG

Basic information

species Glycine max
transcript GLYMA01G34340.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G34340.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv15s0048g00970.t01 (Vitis vinifera), 3'ss of exon 13
--------------------------------------------------------------gtgttgaactaaaaacacat--atctgaatagtcaatattattttattttgaaca-------ctttgtttattaaaatttgtgt-gcccatgcagAACACGTCTCCTGAATATAAGTTGCGTTTGTTGATGATTTATGCATCTGTCTATCCTGAAAAGTTTGAGGGTGATAAAGCTTCAAAGCTAATGCAG
                                                               | ||  | | |||| |  |   | || | |   | || |     || |||   |       |||| ||  ||||||||||| |  |  |||||| |  |  || ||||| |||| |||||| |||||||||| ||||| || || |||||||| |||||||| ||||| |||| || |||||||||||||
gtgatatgctaaagatttttgtctgcataggaactgatgcaccatatttctaagtaatgtccattttttatttaaaataagtttgtttggaaatgaactaatgcaccatattgggtaatgtctacttttttatttaaaatttgtttcacttatgcagGATGCTACTTCTGAAAATAAATTGCGTCTGTTGATGATATATGCTTCCGTTTATCCTGAGAAGTTTGAAGGTGACAAAGGTTTAAAGCTAATGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaatattattttattttgaacactttgtttattaaaatttgtgtgcccatgcagAACACGTCTCCTGAATATAAGTTGCGTTTGTTGATGATTTATGCATCTGTCTATCCTGAAAAGTTTGAGGGTGATAAAGCTTCAAAGCTAATGCAG
     attattttattttgaa  TA-rich tract