1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgccagtatgtcgcgtcaagtgagagaattgagcaattaaaggaagctatgtttttcgttgactttactgactatatatgtatgtgcttatttgcaacagTTTTTGGGCAACCTACGGAATCTTAGAGACTCACATGCAGCTCTTGCCTTCGGCTCTTCTGAGACATCCGACGGGCCTTCATCTGTCACACGAATAATCT
species | Glycine max |
transcript | GLYMA01G29280.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTGGACCAGCTGCCAATCGTTTATTGGAGGCCTATAAAATGCTTTTGAAG TTTTTGGGCAACCTACGGAATCTTAGAGACTCACATGCAGCTCTTGCCTTCEST: gi|51337334|gb|CO981200.1|CO981200
genomic: TTGGACCAGCTGCCAATCGTTTATTGGAGGCCTATAAAATGCTTTTGAAGgtaacctgct ... tttgcaacagTTTTTGGGCAACCTACGGAATCTTAGAGACTCACATGCAGCTCTTGCCTTC
EST: TTGGACCAGCTGCCAATCGTTTATTGGAGGCCTATAAAATGCTTTTGAAG TTTTTGGGCAACCTACGGAATCTTAGAGACTCACATGCAGCTCTTGCCTTCEST: gi|208050846|gb|GD844585.1|GD844585
genomic: TTGGACCAGCTGCCAATCGTTTATTGGAGGCCTATAAAATGCTTTTGAAGgtaacctgct ... tttgcaacagTTTTTGGGCAACCTACGGAATCTTAGAGACTCACATGCAGCTCTTGCCTTC
EST: TTGGACCAGCTGCCAATCGTTTATTGGAGGCCTATAAAATGCTTTTGAAG TTTTTGGGCAACCTACGGAATCTTAGAGACTCACATGCAGCTCTTGCCTTCEST: gi|38191775|gb|CF920981.1|CF920981
genomic: TTGGACCAGCTGCCAATCGTTTATTGGAGGCCTATAAAATGCTTTTGAAGgtaacctgct ... tttgcaacagTTTTTGGGCAACCTACGGAATCTTAGAGACTCACATGCAGCTCTTGCCTTC
EST: TTGGACCAGCTGCCAATCGTTTATTGGAGGCCTATAAAATGCTTTTGAAG TTTTTGGGCAACCTACGGAATCTTAGAGACTCACATGCAGCTCTTGCCTTC
genomic: TTGGACCAGCTGCCAATCGTTTATTGGAGGCCTATAAAATGCTTTTGAAGgtaacctgct ... tttgcaacagTTTTTGGGCAACCTACGGAATCTTAGAGACTCACATGCAGCTCTTGCCTTC
gctatgtttttcgttgactttactgactatatatgtatgtgcttatttgcaacagTTTTTGGGCAACCTACGGAATCTTAGAGACTCACATGCAGCTCTTGCCTTCGGCTCTTCTGAGACATCCGACGGGCCTTCATCTGTCACACGAATAATCT
tactgac putative branch site (score: 1)
cttattt putative PPT
tatatatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgccagtatgtcgcgtcaagtgagagaattgagcaattaaaggaagctatgtttttcgttgactttactgactatatatgtatgtgcttatttgcaacagTTTTTGGGCAACCTACGGAATCTTAGAGACTCACATGCAGCTCTTGCCTTCGGCTCTTCTGAGACATCCGACGGGCCTTCATCTGTCACACGAATAATCT
tgccagt
- - - - - - - - caagtga
- - - - - - - - - - - - - - - - - - - - - - agctatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgtgc