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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtggccttggtttgtgtgatattctcattaaaatttctgcttttagcatgcgtcccttatactcactattatattttgtatgtcattgtcatagGTACAAGGCTGGTATGGATGAGTTAGTCATATTAAAGAAATTAGTAGGTGCTGATCCGGATGATAAGTGTCATTGTGTTCGTTTCCTTTCAAGTTTTAAG

Basic information

species Glycine max
transcript GLYMA01G20810.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G20810.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv01s0011g03350.t01 (Vitis vinifera), 3'ss of exon 7
gtgagtggccttggtttgtgtgatattctcattaaaatttctgcttttagcatgcg-------tcccttatactcactattatattttgtatgtcattgtcatagGTACAAGGCTGGTATGGATGAGTTAGTCATATTAAAGAAATTAGTAGGTGCTGATCCGGATGATAAGTGTCATTGTGTTCGTTTCCTTTCAAGTTTTAAG
   | ||   ||   | |   |||  | ||     ||| | |||  || || |||        ||  || |  |  ||  | ||   | | |    |  |   ||||| || |||||| |||| ||||| |||||||||||||||||||||||||| ||||| ||||| ||| |||||||||||||||| || || ||||| || 
---aatgttgtta--tagacagattatttctcatgaatatttgccattggcctgctgaagagttctgttctgttatctgctctaaactttctccactatttgcagGTATAAAGCTGGTCTGGAAGAGTTGGTCATATTAAAGAAATTAGTAGGTGCAGATCCAGATGACAAGCGTCATTGTGTTCGTTTTCTCTCTAGTTTCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193534365|gb|FK493384.1|FK493384
EST:     GGTGAGCCCAGAGAAGTTGCCATAAAAATTATTCGTAGTAATGATACAAT                         GTACAAGGCTGGTATGGATGAGTTAGTCATATTAAAGAAATTAGTAGGTGC
genomic: GGTGAGCCCAGAGAAGTTGCCATAAAAATTATTCGTAGTAATGATACAATgtgagtggcc ... attgtcatagGTACAAGGCTGGTATGGATGAGTTAGTCATATTAAAGAAATTAGTAGGTGC
EST: gi|208337370|gb|GE133114.1|GE133114
EST:     GGTGAGCCCAGAGAAGTTGCCATAAAAATTATTCGTAGTAATGATACAAT                         GTACAAGGCTGGTATGGATGAGTTAGTCATATTAAAGAAATTAGTAGGTGC
genomic: GGTGAGCCCAGAGAAGTTGCCATAAAAATTATTCGTAGTAATGATACAATgtgagtggcc ... attgtcatagGTACAAGGCTGGTATGGATGAGTTAGTCATATTAAAGAAATTAGTAGGTGC
EST: gi|193341677|gb|FK305951.1|FK305951
EST:     GGTGAGCCCAGAGAAGTTGCCATAAAAATTATTCGTAGTAATGATACAAT                         GTACAAGGCTGGTATGGATGAGTTAGTCATATTAAAGAAATTAGTAGGTGC
genomic: GGTGAGCCCAGAGAAGTTGCCATAAAAATTATTCGTAGTAATGATACAATgtgagtggcc ... attgtcatagGTACAAGGCTGGTATGGATGAGTTAGTCATATTAAAGAAATTAGTAGGTGC
EST: gi|207819887|gb|GD793307.1|GD793307
EST:     GGTGAGCCCAGAGAAGTTGCCATAAAAATTATTCGTAGTAATGATACAAT                         GTACAAGGCTGGTATGGATGAGTTAGTCATATTAAAGAAATTAGTAGGTGC
genomic: GGTGAGCCCAGAGAAGTTGCCATAAAAATTATTCGTAGTAATGATACAATgtgagtggcc ... attgtcatagGTACAAGGCTGGTATGGATGAGTTAGTCATATTAAAGAAATTAGTAGGTGC
EST: gi|193406996|gb|FK375227.1|FK375227
EST:     GGTGAGCCCAGAGAAGTTGCCATAAAAATTATTCGTAGTAATGATACAAT                         GTACAAGGCTGGTATGGATGAGTTAGTCATATTAAAGAAATTAGTAGGTG
genomic: GGTGAGCCCAGAGAAGTTGCCATAAAAATTATTCGTAGTAATGATACAATgtgagtggcc ... attgtcatagGTACAAGGCTGGTATGGATGAGTTAGTCATATTAAAGAAATTAGTAGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttagcatgcgtcccttatactcactattatattttgtatgtcattgtcatagGTACAAGGCTGGTATGGATGAGTTAGTCATATTAAAGAAATTAGTAGGTGCTGATCCGGATGATAAGTGTCATTGTGTTCGTTTCCTTTCAAGTTTTAAG
                    tactcac  putative branch site (score: 1)
                 ttatactcactattat  TA-rich tract