1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatggttcctggttttgctaaatttttttgtacagatttgttaatatgtcaaatggtttgttcattctttgttttggactatgcagGCAAAGGCTCTTGCAGAAAAGAATATGCGTGACTGCCTTGTGCAGAAGGAGCAAGAGGAGAGAAAT
species | Glycine max |
transcript | GLYMA01G07680.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GATGTAAAGCTAGGTTTGAGAGGCATCAGAGAATAGGGGAACGTGTG GCAAAGGCTCTTGCAGAAAAGAATATGCGTGACTGGCTTGTGCAGAAGGAGEST: gi|10237247|gb|BE806135.1|BE806135
genomic: GATGTAAAGCTAGGTTTGAGAGGCATCAGAGAATAGGGGAACGTGTGgtatggttcc ... gactatgcagGCAAAGGCTCTTGCAGAAAAGAATATGCGTGACTGCCTTGTGCAGAAGGAG
EST: AGAGATGTAAAGCTAGGTTTGAGAGGCATCAGAGAATAGGGGAACGTGTG GCAAAGGCTCTTGCAGAAAAGAATATGCGTGACTGCCTTGTGCAGAAGGAGEST: gi|9983973|gb|BE658081.1|BE658081
genomic: AGAGATGTAAAGCTAGGTTTGAGAGGCATCAGAGAATAGGGGAACGTGTGgtatggttcc ... gactatgcagGCAAAGGCTCTTGCAGAAAAGAATATGCGTGACTGCCTTGTGCAGAAGGAG
EST: AGAGATGTAAAGCTAGGTTTGAGAGGCATCAGAGAATAGGGGAACGTGTG GCAAAGGCTCTTGCAGAAAAGAATATGCGTGTCTGCCTTGTGCAGAAGGAGEST: gi|5342566|gb|AI794850.1|AI794850
genomic: AGAGATGTAAAGCTAGGTTTGAGAGGCATCAGAGAATAGGGGAACGTGTGgtatggttcc ... gactatgcagGCAAAGGCTCTTGCAGAAAAGAATATGCGTGACTGCCTTGTGCAGAAGGAG
EST: AGAGATGTAAAGCTAGGTTTGAGAGGCATCAGAGAATAGGGGAACGTGTG GCAAAGGCTCTTGCAGEST: gi|16996582|gb|BM085954.1|BM085954
genomic: AGAGATGTAAAGCTAGGTTTGAGAGGCATCAGAGAATAGGGGAACGTGTGgtatggttcc ... gactatgcagGCAAAGGCTCTTGCAG
EST: AGAGATGTAAAGCTAGGTTTGAGAGGCATCAGAGAATAGGGGAACGTGTG GCAAAGGCTCTTGCAGAAAAGAATATGCGTGACTGCCTTGTGCAGAAGGAG
genomic: AGAGATGTAAAGCTAGGTTTGAGAGGCATCAGAGAATAGGGGAACGTGTGgtatggttcc ... gactatgcagGCAAAGGCTCTTGCAGAAAAGAATATGCGTGACTGCCTTGTGCAGAAGGAG
acagatttgttaatatgtcaaatggtttgttcattctttgttttggactatgcagGCAAAGGCTCTTGCAGAAAAGAATATGCGTGACTGCCTTGTGCAGAAGGAGCAAGAGGAGAGAAAT
tgttaat putative branch site (score: 3)
ttaatatgtcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggttcctggttttgctaaatttttttgtacagatttgttaatatgtcaaatggtttgttcattctttgttttggactatgcagGCAAAGGCTCTTGCAGAAAAGAATATGCGTGACTGCCTTGTGCAGAAGGAGCAAGAGGAGAGAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA