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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctagttacagttattccaactgttagatcattatttgagagttaatgtctatattcagttgggcatatatatttgacttattaatgtatatctatagGAAGGAAGTCAAGAAACTGTGGCCACAATGATTGGCATGGCACTGGGAATGCTTGTTGCTCGCCTTACCATTGGGCACCCACTAGCCATTTGGTTTTCTT

Basic information

species Glycine max
transcript GLYMA01G07190.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G07190.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv01s0011g00500.t01 (Vitis vinifera), 3'ss of exon 9
gttctagttacagttattccaactgttagatcattatt-tgagagttaatgtctatattcagttgggcatatatatttgacttattaatgtatatctatagGAAGGAAGTCAAGAAACTGTGGCCACAATGATTGGCATGGCACTGGGAATGCTTGTTGCTCGCCTTACCATTGGGCACCCACTAGCCATTTGGTTTTCTT
  | |   || |   ||||     | | |||    | | |   |  | |||  ||  |  |  | |    |   ||   |||| ||  | ||  |  | |||||||||||||||| || || || |||||| ||||||||||  | ||||||||| |||||||| |||| || || ||| |  | || |||||||| ||||
-gtgtgagtataagcattctgg--gctggatggaaactatacaaacttatgattaagt--aactagtttcaaccatc-aacttgttt-tatactttgacagGAAGGAAGTCAAGAGACAGTAGCAACAATGGTTGGCATGGCTTTTGGAATGCTTCTTGCTCGCATTACAATGGGACACTCTGTTGCTATTTGGTTCTCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatgtctatattcagttgggcatatatatttgacttattaatgtatatctatagGAAGGAAGTCAAGAAACTGTGGCCACAATGATTGGCATGGCACTGGGAATGCTTGTTGCTCGCCTTACCATTGGGCACCCACTAGCCATTTGGTTTTCTT
                                    tattaat  putative branch site (score: 2)
                      atatatatttgactta  TA-rich tract