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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcctctactttagtttctcatctttgttctgttgtttgtcttttctatacactgacagattttatctcattcttagTTAGAACTTAGTTATAATCCCATTGGACCAGATGGAGCCAAGGCCTTGGCTGAAGTTCTCAAGTTTCATGGGAACATAAAAACCCTTAAGCTTGGTTGGT

Basic information

species Glycine max
transcript GLYMA01G04270.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G04270.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv01s0026g00610.t01 (Vitis vinifera), 3'ss of exon 12
gtaagc-ctctactttagtttctcatctttgttctgttgtttgtcttttctatacactgaca---gat--------------tttatctcattcttagTTAGAACTTAGTTATAATCCCATTGGACCAGATGGAGCCAAGGCCTTGGCTGAAGTTCTCAAGTTTCATGGGAACATAAAAACCCTTAAGCTTGGTTGGT
|| ||  ||| | |||  ||| |    | | || |  | |||  ||||||     | |||||   |||              ||| ||||  ||| |||| ||| |  ||||||||||||| || || || ||||| ||||| ||  |||||||||| |||||||||||||| || |||||||| |||||||||||||
gtgagttctccatttttattttta---tgtattttagttttttccttttcgggttaatgacaacagatcctctctctctctctttctctctctctcagTTGGAATTAGGTTATAATCCCATAGGGCCTGAAGGAGCAAAGGCTTTATCTGAAGTTCTGAAGTTTCATGGGAAGATCAAAACCCTGAAGCTTGGTTGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgttctgttgtttgtcttttctatacactgacagattttatctcattcttagTTAGAACTTAGTTATAATCCCATTGGACCAGATGGAGCCAAGGCCTTGGCTGAAGTTCTCAAGTTTCATGGGAACATAAAAACCCTTAAGCTTGGTTGGT
                            cactgac  putative branch site (score: 2)
                                      ttttatctcattctt  putative PPT
                   ttttctata  TA-rich tract