1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...tgttttggtgcttgctgtctccactctccacattgagctattcaatttagttatatatgtatattgggtgcatgtactgatctctattctatgttagtagGCTGGAAATTTTGTAAAAGATGAAGTATGGTATGCCTTAATTGTTGTGATAACCAATGCTTCTGAGCTTCATGGATATACAGTAAGAGCATTATACAGAG
species | Glycine max |
transcript | GLYMA01G03890.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCCCAGAGAAGATCTGGTATATTGATCAGATGCTCAAGGTTCTGTCTCAG GCTGGAAATTTTGTAAAAGATGAAGTATGGTATGCCTTAATTGTTGTGATAEST: gi|213606433|gb|DB962998.1|DB962998
genomic: CCCCAGAGAAGATCTGGTATATTGATCAGATGCTCAAGGTTCTGTCTCAGgtataaatcc ... atgttagtagGCTGGAAATTTTGTAAAAGATGAAGTATGGTATGCCTTAATTGTTGTGATA
EST: CCCCAGAGAAGATCTGGTATATTGATCAGATGCTCAAGGTTCTGTCTCAG GCTGGAAATTTTGTAAAAGATGAAGTATGGTATGCCTTAATTGTTGTGATA
genomic: CCCCAGAGAAGATCTGGTATATTGATCAGATGCTCAAGGTTCTGTCTCAGgtataaatcc ... atgttagtagGCTGGAAATTTTGTAAAAGATGAAGTATGGTATGCCTTAATTGTTGTGATA
tttagttatatatgtatattgggtgcatgtactgatctctattctatgttagtagGCTGGAAATTTTGTAAAAGATGAAGTATGGTATGCCTTAATTGTTGTGATAACCAATGCTTCTGAGCTTCATGGATATACAGTAAGAGCATTATACAGAG
tactgat putative branch site (score: 2)
ttatatatgtatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttttggtgcttgctgtctccactctccacattgagctattcaatttagttatatatgtatattgggtgcatgtactgatctctattctatgttagtagGCTGGAAATTTTGTAAAAGATGAAGTATGGTATGCCTTAATTGTTGTGATAACCAATGCTTCTGAGCTTCATGGATATACAGTAAGAGCATTATACAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
tgttttg
- - - - -gcttgct
- - - - - - - - - ctccact
- - - - - - - - - - - - -ctccaca
- - - - - - - - - - - - - - - - - - -ctattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgta