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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgactctacatgtaaggtgttcatacaaattgtcacctcttcaatttttgcaacagctacactgacgacgtttttcttttatcctgattttcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT

Basic information

species Glycine max
transcript GLYMA01G03260.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G03260.3 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os07g01760.1 (Oryza sativa), 3'ss of exon 7
tgactctacatgtaaggtgttcatacaaattgtcacctcttcaatttttgcaacagctacactgac--gacgtttttcttttatcctgattttcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT
   |     ||||||| | ||  |   || | |      |   |    | | |    |    |  |  |   | |   |    |||| ||||  | |  |||||||| || |||||||||||||||||||||||  |||| |||||||||||||| |  || || |||
--tcatgtaatgtaagattttactttgaagtttggatagtagcacagataccatttttctgtttgcttgtgatctaattacgttcctcatttcatatgacagACAGTAGACGAGATCTACAAGGTTGCATCAATCGCACTCAGTCCAAATGTTCCTGGGCAGATCTTT

upper sequence: GLYMA01G03260.3 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM5G840582_T01 (Zea mays), 3'ss of exon 8
tgactctacatgtaaggtgttcatacaaattgtcacctcttcaatttttgcaacagctacactga----cgacgtttttcttttatcctgattttcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT
     ||| ||   |      ||     | |||||  |  |  ||   || |     |    | |     |||| |   | ||  | |  ||||    ||||||||||| |||||||||||||||||||||||||||  ||| ||||| |||||||| |  ||||| |||
---tgctagattctattgtgacactttgaatgtcattttctggatacctgaatataattttttaaggtctgacggtagccattctttc-aatttgagcttgcagACAGTAGATGAGATCTACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208191199|gb|GD989187.1|GD989187
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCAT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCAT
EST: gi|120491744|gb|EH219911.1|EH219911
EST:     AATGTGTACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|209697563|gb|BW660570.1|BW660570
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|10233337|gb|BE802225.1|BE802225
EST:     AATGTGGACAGCTAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTACTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|14205591|gb|BG839269.1|BG839269
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|19347413|gb|BM892293.1|BM892293
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|15815783|gb|BI788058.1|BI788058
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|14205453|gb|BG839131.1|BG839131
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCRCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|20498717|gb|BQ273647.1|BQ273647
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAG
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAG
EST: gi|19348485|gb|BM893026.1|BM893026
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|9902378|gb|BE611346.1|BE611346
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTAGATGAGATCTACAACGTTGCTTTAATATCACTTAGTCCAAGTGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|17400767|gb|BM177549.1|BM177549
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|51343112|gb|CO983845.1|CO983845
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATNNACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|31471989|gb|CD414017.1|CD414017
EST:     AATGTGGAAAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|31309987|gb|CD395190.1|CD395190
EST:     TTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: TTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|51337166|gb|CO981032.1|CO981032
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|14206264|gb|BG839942.1|BG839942
EST:     AAATGACCAACATTCCTCCAGAGG                         ACAGTTGATGAGATNTACAAGGGTTGCATCAATATCACTTAGTCCAAATG
genomic: AAATGACCAACATTCCTCCAGA-Ggtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAA-GGTTGCATCAATATCACTTAGTCCAAATG
EST: gi|31464694|gb|CD406707.1|CD406707
EST:     TTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: TTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|7234812|gb|AW570145.1|AW570145
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|7234825|gb|AW570158.1|AW570158
EST:     GAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: GAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|31561480|gb|CD487318.1|CD487318
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|22932146|gb|BU549285.1|BU549285
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCANCATTNNTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|14205407|gb|BG839085.1|BG839085
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|120529211|gb|EH257345.1|EH257345
EST:     AATGTGGACAGCGAGGTGGATATTTGGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|7796142|gb|AW781539.1|AW781539
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTTAGTCCCAATGG
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCAC-TTAGTCCAAATGT
EST: gi|120492417|gb|EH220584.1|EH220584
EST:     TGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: TGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|26269528|gb|CA820591.1|CA820591
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|27424258|gb|CA935778.1|CA935778
EST:     CCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: CCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|120532614|gb|EH260747.1|EH260747
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
EST: gi|120491540|gb|EH219707.1|EH219707
EST:     AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAG                         ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT
genomic: AATGTGGACAGCGAGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGgtttgccttt ... tcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgcaacagctacactgacgacgtttttcttttatcctgattttcttttgcagACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT
                       cgtttttcttttatcc  CT-rich tract
                         tttttcttttat  TA-rich tract