1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...attacgttaacaaagcttctcgttttggacactgccaaaaatatcactacaatttttatttttttttcctgaattaatgttttgatgatgatgatgatagGTTGGACACCGGACATACTTGAACTTAAAGACTATAAGGCCAAATATGGCATTGATGGGTCAGCTTTTCCTGAATAAAACCATAGAGTGGTCAGAGTTTC
species | Glycine max |
transcript | GLYMA01G02850.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATAGTGACATATTTATCTCTGCTTCCCCAGGAAACATGCACAATGCATTG GTTGGACACCGGACATACTTGAACTTAAAGACTATAAGGCCAAATATGGCAEST: gi|8826138|gb|BE209798.1|BE209798
genomic: ATAGTGACATATTTATCTCTGCTTCCCCAGGAAACATGCACAATGCATTGgtgagttgtg ... atgatgatagGTTGGACACCGGACATACTTGAACTTAAAGACTATAAGGCCAAATATGGCA
EST: TTTATCTCTGCTTCCCCAGGAAACATGCACAATGCATTG GTTGGACACCGGACATACTTGAACTTAAAGACTATAAGGCCAAATATGGCAEST: gi|23731182|gb|BU763701.1|BU763701
genomic: TTTATCTCTGCTTCCCCAGGAAACATGCACAATGCATTGgtgagttgtg ... atgatgatagGTTGGACACCGGACATACTTGAACTTAAAGACTATAAGGCCAAATATGGCA
EST: ATAGTGACATATTTATCTCTGCTTCCCCAGGAAACATGCACAATGCATTG GTTGGACACCGGACATACTTGAACTTAAAGACTATAAGGCCAAATATGGCAEST: gi|192294017|gb|FG987186.1|FG987186
genomic: ATAGTGACATATTTATCTCTGCTTCCCCAGGAAACATGCACAATGCATTGgtgagttgtg ... atgatgatagGTTGGACACCGGACATACTTGAACTTAAAGACTATAAGGCCAAATATGGCA
EST: ATAGTGACATATTTATCTCTGCTTCCCCAGGAAACATGCACAATGGATTG GTTGGACACCGGACATACTTGAACTTAAAGACTATAAGGCCAAATATGGCAEST: gi|209705988|gb|BW664859.1|BW664859
genomic: ATAGTGACATATTTATCTCTGCTTCCCCAGGAAACATGCACAATGCATTGgtgagttgtg ... atgatgatagGTTGGACACCGGACATACTTGAACTTAAAGACTATAAGGCCAAATATGGCA
EST: ATAGTGACATATTTATCTCTGCTCCCCCAGGAAACATGCACAATGCATTG GTTGGACACCGGACATACTTGAACTTAAAGACTATAAGGCCAAATATGGCAEST: gi|9204804|gb|BE331028.1|BE331028
genomic: ATAGTGACATATTTATCTCTGCTTCCCCAGGAAACATGCACAATGCATTGgtgagttgtg ... atgatgatagGTTGGACACCGGACATACTTGAACTTAAAGACTATAAGGCCAAATATGGCA
EST: ATAGTGACATATTTATCTCTGCTTCCCCAGGAAACATGCACAATGCATTG GTTGGACACCGGACATACTTGAACTTAAAGACTATAAGGCCAAATATGGCA
genomic: ATAGTGACATATTTATCTCTGCTTCCCCAGGAAACATGCACAATGCATTGgtgagttgtg ... atgatgatagGTTGGACACCGGACATACTTGAACTTAAAGACTATAAGGCCAAATATGGCA
actacaatttttatttttttttcctgaattaatgttttgatgatgatgatgatagGTTGGACACCGGACATACTTGAACTTAAAGACTATAAGGCCAAATATGGCATTGATGGGTCAGCTTTTCCTGAATAAAACCATAGAGTGGTCAGAGTTTC
aatttttatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attacgttaacaaagcttctcgttttggacactgccaaaaatatcactacaatttttatttttttttcctgaattaatgttttgatgatgatgatgatagGTTGGACACCGGACATACTTGAACTTAAAGACTATAAGGCCAAATATGGCATTGATGGGTCAGCTTTTCCTGAATAAAACCATAGAGTGGTCAGAGTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - gcttctc
- - - - - - - - - - - - - - -cactgcc
- - - - - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgatg