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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactagatacccttctgttaagattcgattcttgtatgaggagcatctattttaaacttcctaacacaagtattcttattcagGTCTGGAATAATGATGTCAGGTTCTTCTGTGTTAAGGATTCTTCTGGTAGTCCAATTGCGTATTTTTATTTTGATCCTTATAGTCGTCCTGCTGAAAAAA

Basic information

species Glycine max
transcript GLYMA01G02480.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G02480.1 (Glycine max), 3'ss of exon 9
lower sequence: AT5G10540.1 (Arabidopsis thaliana), 3'ss of exon 9
gtaaa--ctagatacccttctgttaagattcgattcttgtatgaggagcatctattttaaacttcctaacaca-agtattcttattcagGTCTGGAATAATGATGTCAGGTTCTTCTGTGTTAAGGATTCTTCTGGTAGTCCAATTGCGTATTTTTATTTTGATCCTTATAGTCGTCCTGCTGAAAAAA
|||||  || ||      | |||   | |||  |   |||       ||   ||| ||      | |   | | | ||||    |  |||||||||| |  ||||| ||||||| |||||| || ||||||||||| | ||||| ||| ||||| || |||||||| ||   ||| ||| | ||||| |
gtaaaatctggaacttaatatgtcgtgtttcagtatatgtccatcatgctattatgttttttaacatgttatatattattgccgtgaagGTCTGGAACAGCGATGTTAGGTTCTACTGTGTCAAAGATTCTTCTGGAAATCCAACTGCTTATTTCTACTTTGATCCCTACTCTCGCCCTTCAGAAAAGA

upper sequence: GLYMA01G02480.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv00s0211g00060.t01 (Vitis vinifera), 3'ss of exon 12
gtaaactagatacccttctgttaagattcgattcttgtatgaggagcatctattttaaacttcctaacacaagta-ttcttattc---agGTCTGGAATAATGATGTCAGGTTCTTCTGTGTTAAGGATTCTTCTGGTAGTCCAATTGCGTATTTTTATTTTGATCCTTATAGTCGTCCTGCTGAAAAAA
||||  ||  ||   | |  || |  |   || ||| |||    |     |  |||  |||||  | || |  |  || ||  ||   |||| ||||| |||||||| || |||| |||||| || ||  || | |||||||||||||| |||||||| |||||||| |||  ||||||  |||| ||| 
gtaatatatttaaattgccttttatttgatatccttctatcctaaagtgatggtttccacttctaatcatatatggtttttgctccttagGTTTGGAACAATGATGTGAGATTCTACTGTGTGAAAGACACTGCAGGTAGTCCAATTGCATATTTTTACTTTGATCCATATTCTCGTCCATCTGAGAAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttgtatgaggagcatctattttaaacttcctaacacaagtattcttattcagGTCTGGAATAATGATGTCAGGTTCTTCTGTGTTAAGGATTCTTCTGGTAGTCCAATTGCGTATTTTTATTTTGATCCTTATAGTCGTCCTGCTGAAAAAA
                              tcctaac  putative branch site (score: 1)
                                            ttcttattc  putative PPT
                atctattttaaactt  TA-rich tract