1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...attaaacttttaatagctcaaagtgtgttgttgggattttgccgtgagtaatattttattctggcttcaactaactttgcatgttttttaactttcacagAGCAATGAGCAAATGAAGCAATATGTTCACTTGTTGAACTCTACTCTAACGGCTACTGAGAGGACCATTTGCTGCATACTAGAGAACAACCAGAAGGAAG
species | Glycine max |
transcript | GLYMA20G37700.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTACAGACTATCAGGCCAGAAGATTAGAAATTCGATATGGTCAGAAAAAG AGCAATGAGCAAATGAAGCAATATGTTCACTTGTTGAACTCTACTCTAACGEST: gi|8402491|gb|BE058125.1|BE058125
genomic: GTACAGACTATCAGGCCAGAAGATTAGAAATTCGATATGGTCAGAAAAAGgttagtaatg ... actttcacagAGCAATGAGCAAATGAAGCAATATGTTCACTTGTTGAACTCTACTCTAACG
EST: GTACAGACTATCAGGCCAGAAGATTAGAAATTCGATATGGTCAGAAAAAG AGCAATGAGCAAATGAAGCAATATGTTCACTTGTTGAACTCTACTCTAACGEST: gi|192296773|gb|FG993071.1|FG993071
genomic: GTACAGACTATCAGGCCAGAAGATTAGAAATTCGATATGGTCAGAAAAAGgttagtaatg ... actttcacagAGCAATGAGCAAATGAAGCAATATGTTCACTTGTTGAACTCTACTCTAACG
EST: GTACAGACTATCAGGCCAGAAGATTAGAAATTCGATATGGTCAGAAAAAG AGCAATGAGCAAATGAAGCAATATGTTCACTTGTTGAACTCTACTCTAACGEST: gi|15286655|gb|BI470546.1|BI470546
genomic: GTACAGACTATCAGGCCAGAAGATTAGAAATTCGATATGGTCAGAAAAAGgttagtaatg ... actttcacagAGCAATGAGCAAATGAAGCAATATGTTCACTTGTTGAACTCTACTCTAACG
EST: GTACAGACTATCAGGCCAGAAGATTAGAAATTCGATATGGTCAGAAAAAG AGCAATGAGCAAATGAAGCAATATGTTCACTTGTTGAACTCTACTCTAACGEST: gi|8286261|gb|BE023820.1|BE023820
genomic: GTACAGACTATCAGGCCAGAAGATTAGAAATTCGATATGGTCAGAAAAAGgttagtaatg ... actttcacagAGCAATGAGCAAATGAAGCAATATGTTCACTTGTTGAACTCTACTCTAACG
EST: GTACAGACTATCAGGCCAGAAGATTAGAAATTCGATATGGTCAGAAAAAG AGCAATGAGCAAATGAAGCAATATGTTCACTTGTTGAACTCTACTCTAACGEST: gi|192296772|gb|FG993070.1|FG993070
genomic: GTACAGACTATCAGGCCAGAAGATTAGAAATTCGATATGGTCAGAAAAAGgttagtaatg ... actttcacagAGCAATGAGCAAATGAAGCAATATGTTCACTTGTTGAACTCTACTCTAACG
EST: GTACAGACTATCAGGCCAGAAGATTAGAAATTCGATATGGTCAGAAAAAG AGCAATGAGCAAATGAAGCAATATGTTCACTTGTTGAACTCTACTCTAACGEST: gi|15814019|gb|BI786294.1|BI786294
genomic: GTACAGACTATCAGGCCAGAAGATTAGAAATTCGATATGGTCAGAAAAAGgttagtaatg ... actttcacagAGCAATGAGCAAATGAAGCAATATGTTCACTTGTTGAACTCTACTCTAACG
EST: GTACAGACTATCAGGCCAGAAGATTAGAAATTCGATATGGTCAGAAAAAG AGCAATGAGCAAATGAAGCAATATGTTCACTTGTTGAACTCTACTCTAACG
genomic: GTACAGACTATCAGGCCAGAAGATTAGAAATTCGATATGGTCAGAAAAAGgttagtaatg ... actttcacagAGCAATGAGCAAATGAAGCAATATGTTCACTTGTTGAACTCTACTCTAACG
gagtaatattttattctggcttcaactaactttgcatgttttttaactttcacagAGCAATGAGCAAATGAAGCAATATGTTCACTTGTTGAACTCTACTCTAACGGCTACTGAGAGGACCATTTGCTGCATACTAGAGAACAACCAGAAGGAAG
ctttcac CT-rich tract
atgttttttaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaaacttttaatagctcaaagtgtgttgttgggattttgccgtgagtaatattttattctggcttcaactaactttgcatgttttttaactttcacagAGCAATGAGCAAATGAAGCAATATGTTCACTTGTTGAACTCTACTCTAACGGCTACTGAGAGGACCATTTGCTGCATACTAGAGAACAACCAGAAGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - aagtgtg
- - - - - - - - - - - - - - tgttggg
- - - - - - - - - - - - - - - - - - ttttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgtt