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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtgaatttatggcttatgtttgaaattaaatgttcacttacaaagtaaaacatgctgatttttagttagtatgtagGTAGTTGGAGGTATGGATGATCAAATTCCATCAGTTCCTTCATCAACTGGAGTTCAGGTTATTACATATTCAAAGCTACTTAATCAG

Basic information

species Glycine max
transcript GLYMA20G28200.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28200.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 8
--------------------------------gtatgtgtgaattta-tggcttatgtttgaaattaaatgt-tcacttacaaagtaaaacatgctgatttttagttagtatgtagGTAGTTGGAGGTATGGATGATCAAATTCCATCAGTTCCTTCATCAACTGGAGTTCAGGTTATTACATATTCAAAGCTACTTAATCAG
                                | |||| || ||    |  | |  | || |     ||||| |   || ||    |   | |  |    |||  ||  ||   ||||||||||||| || || |||||||| |||||| |||| ||| ||||||||||| ||||| |  |||||||||| ||||| ||||||
gtataaaaggctatatctgatctttcttaattgaatgtctggataagctaacattggctttagtgctaatgtatggttttcatgaaagttcgttatctgctttcctttttacacagGTAGTTGGAGGAATAGACGATCAAATGCCATCACTTCCATCAACAACTGGAGTTGAGGTTGTATCATATTCAAAACTACTCAATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|105632632|gb|DW246482.1|DW246482
EST:     ACGTCTAATTGTG                         GTAGTTGGAGGTATGGATGATCAAATTCCATCAGTTCCTTCATCAACTGGA
genomic: ACGTCTAATTGTGgtatgtgtga ... tagtatgtagGTAGTTGGAGGTATGGATGATCAAATTCCATCAGTTCCTTCATCAACTGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaattaaatgttcacttacaaagtaaaacatgctgatttttagttagtatgtagGTAGTTGGAGGTATGGATGATCAAATTCCATCAGTTCCTTCATCAACTGGAGTTCAGGTTATTACATATTCAAAGCTACTTAATCAG
                                    atttttagttagtat  TA-rich tract