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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattcaatctgattcttttttattagctttgaattggctggaaatggaattaattgattatgtatctgcattgtatttgagatttgaaaacatttttggtaattactatgtttgatcttggcagAACTTCCAGAGAGATCTTATGGCGCTGACTGTCGTATATATCTGCCTGAAAACCCTGCAAGCAGGTTTAAGAATGTTTAT

Basic information

species Glycine max
transcript GLYMA20G25830.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25830.2 (Glycine max), 3'ss of exon 8
lower sequence: AT1G15110.2 (Arabidopsis thaliana), 3'ss of exon 6
gtaattcaatctgattcttttttattagctttgaattggctggaaatggaattaattgattatgtatctgcattgtatttgagatttgaaaacatttttggtaattactatgtttgatcttggcagAACTTCCAGAGAGATCTTATGGCGCTGACTGTCGTATATATCTGCCTGAAAACCCTGCAAGCAGGTTTAAGAATGTTTAT
                              |   | |  | |  |       |  ||  |   | | || |    |   |||   ||||  |  || |||    |    |||||        ||||||||||| |||| ||| || || ||||| || ||||||||| |||||||  ||||  ||| ||||||||||||| |||||
-----------------------------gtaagagtttcggagaggaatgctgtttattcgaggagctaccacatcaatga---ttgaccatcttattgagtttgctcatgtt--------gcagAACTTCCTGAGAAATCATACGGTGCTGATTGCCGTATATATGTGCCTGATCACCCAACAAACAGGTTTAAGAATCTTTAT

upper sequence: GLYMA20G25830.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 3'ss of exon 6
------------------------------------------------------gtaattcaatctgattcttttttattagctttgaattggctggaaatggaattaattgattatgtatctgcattgtatttgagatttgaaaacatttttggtaattactatgtttgatcttggcagAACTTCCAGAGAGATCTTATGGCGCTGACTGTCGTATATATCTGCCTGAAAACCCTGCAAGCAGGTTTAAGAATGTTTAT
                                                       || ||   | || ||  | |     | |||    || |       ||  |   |||   |   |  ||||||   |||  |||| ||   | ||  ||  ||| || | ||| ||| |||  |||||||||| || ||||| ||||| ||||| || || || ||| |||||||||| ||  | |||||||||||||||||||||
gtaatgcatttgaactttgccaaactctcccctctgaacattacttgacatggattagtttgttttgctttctgtaatgcaccttctcttttgtatttgctgagacagattagcttattgactgcat---attcaagatctgtctagatcgtttttaactatt-tgtatga-cttaacagAACTTCCTGAAAGATCGTATGGTGCTGATTGCCGCATTTATGTGCCTGAAAATCCAACCAGCAGGTTTAAGAATGTTTAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtatttgagatttgaaaacatttttggtaattactatgtttgatcttggcagAACTTCCAGAGAGATCTTATGGCGCTGACTGTCGTATATATCTGCCTGAAAACCCTGCAAGCAGGTTTAAGAATGTTTAT
                                        gtttgat  putative branch site (score: 5)
            atttgaaaacattttt  TA-rich tract