1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttatttaagccttatgtctgcataccaccctatactcacaaaacatgtacaaagcaaaagaaaacctttgaaagacattttaatcaatgtattcttgcagGTTATAGGAATCGATCTGTTATCTCAGTCTTTGTTACCAGCCATTGTTGAGCTTGCTGAGGATAGGCATTGGAGGGTCCGGCTTGCAATTATAGAATATA
species | Glycine max |
transcript | GLYMA20G24790.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTCCTGACGTACGCCTAAACATTATCAGCAAGCTTGATCAAGTGAATCAG GTTATAGGAATCGATCTGTTATCTCAGTCTEST: gi|9205515|gb|BE331739.1|BE331739
genomic: TTCCTGACGTACGCCTAAACATTATCAGCAAGCTTGATCAAGTGAATCAGgttgttatat ... attcttgcagGTTATAGGAATCGATCTGTTATCTCAGTCT
EST: TTCCTGACGTACGCCTAAACATTATCAGCAAGCTTGATCAAGTGAATCAG GTTATAGGAATCGATCTGTTATCTCAGTCTTTGTTACCAGCCATTGTTGAGEST: gi|193611808|gb|FK566277.1|FK566277
genomic: TTCCTGACGTACGCCTAAACATTATCAGCAAGCTTGATCAAGTGAATCAGgttgttatat ... attcttgcagGTTATAGGAATCGATCTGTTATCTCAGTCTTTGTTACCAGCCATTGTTGAG
EST: TTCCTGACGTACGCCTAAACATTATCAGCAAGCTTGATCAAGTGAATCAG GTTATAGGAATCGATCTGTTATCTCAGTCTTTGTTACCAGCCATTGTTGAGEST: gi|308098474|gb|HO760215.1|HO760215
genomic: TTCCTGACGTACGCCTAAACATTATCAGCAAGCTTGATCAAGTGAATCAGgttgttatat ... attcttgcagGTTATAGGAATCGATCTGTTATCTCAGTCTTTGTTACCAGCCATTGTTGAG
EST: ACGCCTAAACATTATCAGCAAGCTTGATCAAGTGAATCAG GTTATAGGAATCGATCTGTTATCTCAGTCTTTGTTACCAGCCATTGTTGAGEST: gi|308098470|gb|HO760211.1|HO760211
genomic: ACGCCTAAACATTATCAGCAAGCTTGATCAAGTGAATCAGgttgttatat ... attcttgcagGTTATAGGAATCGATCTGTTATCTCAGTCTTTGTTACCAGCCATTGTTGAG
EST: ACGCCTAAACATTATCAGCAAGCTTGATCAAGTGAATCAG GTTATAGGAATCGATCTGTTATCTCAGTCTTTGTTACCAGCCATTGTTGAG
genomic: ACGCCTAAACATTATCAGCAAGCTTGATCAAGTGAATCAGgttgttatat ... attcttgcagGTTATAGGAATCGATCTGTTATCTCAGTCTTTGTTACCAGCCATTGTTGAG
tgtacaaagcaaaagaaaacctttgaaagacattttaatcaatgtattcttgcagGTTATAGGAATCGATCTGTTATCTCAGTCTTTGTTACCAGCCATTGTTGAGCTTGCTGAGGATAGGCATTGGAGGGTCCGGCTTGCAATTATAGAATATA
ttttaat putative branch site (score: 3)
tattctt putative PPT
attttaatcaatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatttaagccttatgtctgcataccaccctatactcacaaaacatgtacaaagcaaaagaaaacctttgaaagacattttaatcaatgtattcttgcagGTTATAGGAATCGATCTGTTATCTCAGTCTTTGTTACCAGCCATTGTTGAGCTTGCTGAGGATAGGCATTGGAGGGTCCGGCTTGCAATTATAGAATATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - -ccttatg
- - - - - - - - - -gcatacc
- - - - - - - - - - - - - - - - -actcaca
- - - - - - - - - - - - - - - - - - - - - -catgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaagac