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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcatgaagagattaattagtctggaccatgatcattgatagttttggactatacaataatttttccttagcctttgttttagtttaattagacatgcatgagtggtgttgtattgtttgtgcacaaattgtgcttttgtgacttgattttgagTGCAAATTTGCTTAATGAAATGCAGCCGCAAGTGGAAGTGGCTCTGATAGATGGGAATGAGTATTTTGTGAAGGTGTTCTGTGAGCACAGGCCTGATGGG

Basic information

species Glycine max
transcript GLYMA20G24170.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G24170.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv01s0127g00860.t01 (Vitis vinifera), 3'ss of exon 6
gtcatgaagagattaattagtctggaccatgatcattgatagttttggactatacaataatttttccttagcctttgttttagtttaattagacatgcatgagtggtgttgtattgtttgtgcacaaattgtgcttttgtgacttgattttgagTGCAAATTTGCTTAATGAAATGCAGCCGCAAGTGGAAGTGGCTCTGATAGATGGGAATGAGTATTTTGTGAAGGTGTTCTGTGAGCACAGGCCTGATGGG-------------------------
                                                                                            || || ||||    | |||| |   || ||      |  |   | ||||  |  |||   |||| || ||      |||   ||||||| |||||||||||||||| |||||| || |||||||  || || |||||||| |||||||||| | |||  |||                         
------------------------------------------------------------------------------------------gtacttg-atgatatttattgtttccattctgtgattctcttttctgtgtg-ttcaattggaagtgaaagttgaaactatgc--tgcagCCCCAAGTGGAAGTGGCTCAGATAGAAGGCAATGAGTTCTTCGTTAAGGTGTTTTGTGAGCACAAGGCTGGCGGGTTTGCGAGGCTGATGGAGGCTCTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagtggtgttgtattgtttgtgcacaaattgtgcttttgtgacttgattttgagTGCAAATTTGCTTAATGAAATGCAGCCGCAAGTGGAAGTGGCTCTGATAGATGGGAATGAGTATTTTGTGAAGGTGTTCTGTGAGCACAGGCCTGATGGG
                                          acttgat  putative branch site (score: 5)
            tattgttt  TA-rich tract