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...cttatttccttcagatttatttttgcttaatcgtttacttaaactctctacttctgtacttcttgtaagatgaaagtaatttttcacaaatactatgtagGGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAGCGTGACTTTGAGGAGAATGGATCAA
species | Glycine max |
transcript | GLYMA20G24070.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTCAGGCTGGCTTAATCAAGCGACTAGAGAAATCTGATAATCTTCTTGAG GGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAACEST: gi|23729967|gb|BU763089.1|BU763089
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagcgga ... tactatgtagGGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAAC
EST: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAG GGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAACEST: gi|16279488|gb|BI943462.1|BI943462
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagcgga ... tactatgtagGGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAAC
EST: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAG GGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAACEST: gi|193680305|gb|FK624813.1|FK624813
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagcgga ... tactatgtagGGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAAC
EST: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAG GGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAACEST: gi|151411391|gb|EV281202.1|EV281202
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagcgga ... tactatgtagGGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAAC
EST: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAG GGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAACEST: gi|19346883|gb|BM891771.1|BM891771
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagcgga ... tactatgtagGGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAAC
EST: GATAATCTTCTTGAG GGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAACEST: gi|16279486|gb|BI943461.1|BI943461
genomic: GATAATCTTCTTGAGgtatagcgga ... tactatgtagGGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAAC
EST: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAG GGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAAC
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagcgga ... tactatgtagGGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAAC
ctctacttctgtacttcttgtaagatgaaagtaatttttcacaaatactatgtagGGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAGCGTGACTTTGAGGAGAATGGATCAA
taatttttcacaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttatttccttcagatttatttttgcttaatcgtttacttaaactctctacttctgtacttcttgtaagatgaaagtaatttttcacaaatactatgtagGGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAGCGTGACTTTGAGGAGAATGGATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - tccttca