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...ttgggtagtttatgatcacactttttctaaattgtgcatgctgctgtaaaccgtttcttttatgttttagccatgtgcttaatgcaagatgaatatgcagGTCTCCAAACCGGGTTCTGTTCAAGTTGAAAAGCTTATGAATATTGAGCGCTATTCCCATGTTATGCACATCAGCTCAACA
species | Glycine max |
transcript | GLYMA20G23680.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTAATGCTAGTTGATTTGGGGAGAAATGATGTTGGAAAG GTCTCCAAACCGGGTTCTGTTCAAGTTGAAAAGCTTATGAATATTGAGCGCEST: gi|18040606|gb|BM308900.1|BM308900
genomic: GTAATGCTAGTTGATTTGGGGAGAAATGATGTTGGAAAGgtataatata ... gaatatgcagGTCTCCAAACCGGGTTCTGTTCAAGTTGAAAAGCTTATGAATATTGAGCGC
EST: GTGCAGAGCACGTAATGCTAGTTGATTTGGGGAGAAATGATGTTGGAAAG GTCTCCAAACCGGGTTCTGTTCAAGTTGAAAAGCTTATGAATATTGAGCGCEST: gi|51338293|gb|CO982159.1|CO982159
genomic: GTGCAGAGCACGTAATGCTAGTTGATTTGGGGAGAAATGATGTTGGAAAGgtataatata ... gaatatgcagGTCTCCAAACCGGGTTCTGTTCAAGTTGAAAAGCTTATGAATATTGAGCGC
EST: GTGCAGAGCACGTAATGCTAGTTGATTTGGGGAGAAATGATGTTGGAAAG GTCTCCAAACCGGGTTCTGTTCAAGTTGAAAAGCTTATGAATATTGAGCGCEST: gi|208329063|gb|GE128401.1|GE128401
genomic: GTGCAGAGCACGTAATGCTAGTTGATTTGGGGAGAAATGATGTTGGAAAGgtataatata ... gaatatgcagGTCTCCAAACCGGGTTCTGTTCAAGTTGAAAAGCTTATGAATATTGAGCGC
EST: AAATGATGTTGGAAAG GTCTCCAAACCGGGTTCTGTTCAAGTTGAAAAGCTTATGAATATTGAGCGC
genomic: AAATGATGTTGGAAAGgtataatata ... gaatatgcagGTCTCCAAACCGGGTTCTGTTCAAGTTGAAAAGCTTATGAATATTGAGCGC
gtaaaccgtttcttttatgttttagccatgtgcttaatgcaagatgaatatgcagGTCTCCAAACCGGGTTCTGTTCAAGTTGAAAAGCTTATGAATATTGAGCGCTATTCCCATGTTATGCACATCAGCTCAACA
gcttaat putative branch site (score: 4)
tttcttttatgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgggtagtttatgatcacactttttctaaattgtgcatgctgctgtaaaccgtttcttttatgttttagccatgtgcttaatgcaagatgaatatgcagGTCTCCAAACCGGGTTCTGTTCAAGTTGAAAAGCTTATGAATATTGAGCGCTATTCCCATGTTATGCACATCAGCTCAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA