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gttcattatacgcccttctacacagtagtaatatttatgtaaattcttttgcactataagataaatatattcagcatttgaaaaacatttatcagATTTCAAGGATGACCCCGACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG
species | Glycine max |
transcript | GLYMA20G23080.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG ATTTCAAGGATGACCCCGACCTATAEST: gi|13790097|gb|BG652688.1|BG652688
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttatcagATTTCAAGGATGACCCCGACCTATA
EST: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAN ATTTCAAGGATGACCCCGACCTATATGTTTTCCCCAACTTGAAGTACGTGGEST: gi|7147510|gb|AW509432.1|AW509432
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttatcagATTTCAAGGATGACCCCGACCTATATGTTTTCCCCAACTTGAAGTACGTGG
EST: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG ATNTCAAGGATGACCCCGACCTATATGTNTTTCCC-AACTTGAAGTACGTGEST: gi|5606713|gb|AI900811.1|AI900811
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttatcagATTTCAAGGATGACCCCGACCTATATGT-TTTCCCCAACTTGAAGTACGTG
EST: TATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG ATTTCAAGGATGACCCCGACCTATATGTTTTCCCCAACTTGAAGTACGTGGEST: gi|193341174|gb|FK306414.1|FK306414
genomic: TATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttatcagATTTCAAGGATGACCCCGACCTATATGTTTTCCCCAACTTGAAGTACGTGG
EST: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG ATTTCAAGGATGACCCCGACCTATATGTTTTCCCCAACTTGAAGTACGTGGEST: gi|24136456|gb|BU926966.1|BU926966
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttatcagATTTCAAGGATGACCCCGACCTATATGTTTTCCCCAACTTGAAGTACGTGG
EST: GAACCCCAAGTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG ATTTCAAGGATGACCCCGACCTATATGTTTTCCCEST: gi|208317285|gb|GE117494.1|GE117494
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttatcagATTTCAAGGATGACCCCGACCTATATGTTTTCCC
EST: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG ATTTCAAGGATGACCCCGACCTATATGTTTTCCCCAACTTGAAGTACGTGGEST: gi|208091443|gb|GD886338.1|GD886338
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttatcagATTTCAAGGATGACCCCGACCTATATGTTTTCCCCAACTTGAAGTACGTGG
EST: GAGCCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG ATTTCAAGGATGACCCCGACCTATATGTTTTCCCCAACTTGAAGTATGTGGEST: gi|26045988|gb|CA783372.1|CA783372
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttatcagATTTCAAGGATGACCCCGACCTATATGTTTTCCCCAACTTGAAGTACGTGG
EST: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG ATTTCAAGGATGACCCCGACCTATATGTTTTCCCCAACTTGAAGTACGTGGEST: gi|208268672|gb|GE072089.1|GE072089
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttatcagATTTCAAGGATGACCCCGACCTATATGTTTTCCCCAACTTGAAGTACGTGG
EST: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG ATTTCAAGGATGACCCCGEST: gi|22524331|gb|BU083142.1|BU083142
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttatcagATTTCAAGGATGACCCCG
EST: AACCCCAACTATAAAGGAAAATGGAAAGCACCATTGATTGATAAACCCAG ATTTCAAGGATGACCCCGACCTATATGTTATCCCCAACTT
genomic: AACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAA-CCCAGgttcattata ... catttatcagATTTCAAGGATGACCCCGACCTATATGTTTTCCCCAACTT
aaattcttttgcactataagataaatatattcagcatttgaaaaacatttatcagATTTCAAGGATGACCCCGACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG
actataagataaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcattatacgcccttctacacagtagtaatatttatgtaaattcttttgcactataagataaatatattcagcatttgaaaaacatttatcagATTTCAAGGATGACCCCGACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG