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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctactcttataatctatacctctgacacggaatacattttgaatttttttatgaagtctgtttagtaaattgatttatgcttaaaggctaacttgtgctgcattggcatcttcaattattttttttactgtgacttcattttttttgtatgatttggctgttagGTTTCGGACTTTGGGCTTGCAAAATTGGCATTAGATTCAAATACACATGTAACTACACTTGTAATGGGAACCTTTGG

Basic information

species Glycine max
transcript GLYMA20G20300.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G20300.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv14s0083g00330.t01 (Vitis vinifera), 3'ss of exon 4
gtaagctactcttataatctatacctctgacacggaatacattttgaatttttttatgaagtctgtttagtaaattgatttatgcttaaaggctaacttgtgctgcattggcatcttcaattattttttttactgtgacttcattttttttgtatgatttggctgttagGTTTCGGACTTTGGGCTTGCAAAATTGGCATTAGATTCAAATACACATGTAACTACACTTGTAATGGGAACCTTTGG
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------------------------------------------------------------gaatgtctaacatgtccatatatcataacaag---atttctg----gttggtagc--aaaattttgcttctccaaaggcacatttctaaagatgccttttcattaacagGTTTCAGATTTTGGGCTTGCAAAGTTAGCATTGGATGCCAATACACATGTAACCACTCGTGTGATGGGAACCTTTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcaattattttttttactgtgacttcattttttttgtatgatttggctgttagGTTTCGGACTTTGGGCTTGCAAAATTGGCATTAGATTCAAATACACATGTAACTACACTTGTAATGGGAACCTTTGG
                         ttcattttttttgtat  TA-rich tract