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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcagtgccattcacttttgcatttgacttttaaaataattgatatttgctgacacctacatatctccagAGACAAAGACCTTTATTGATTATTGCCGAGGATGTGGAAAGTGATGCACTTGCAACTCTTATTCTAAATAAGCTTCGGGCCGGAATTAAG

Basic information

species Glycine max
transcript GLYMA20G19980.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G19980.1 (Glycine max), 3'ss of exon 8
lower sequence: AT3G23990.1 (Arabidopsis thaliana), 3'ss of exon 6
----------------------gtgag-cagtg-ccattcacttttgcatttgacttttaaaa--taattgatat--ttgctgacacctacata----tctccagAGACAAAGACCTTTATTGATTATTGCCGAGGATGTGGAAAGTGATGCACTTGCAACTCTTATTCTAAATAAGCTTCGGGCCGGAATTAAG
                      || |  | ||   ||||  ||  || |  ||   | | |||   |  |||| |  || |||    | | |||      | ||||| ||||||||  |||||||| || | || ||||||||||||||||| |||||||||||||| || || ||||| || ||||||||||||
gtatgtctactttatctttatagtaaatctgtaatcattttctcatgtaaatgctgtgtgaaaggcatctgatgtggtttctgttgtccaaataaaatcttacagAGGCAAAGACCACTATTGATTGTTTCTGAAGATGTGGAAAGTGATGCTCTTGCAACTCTTATCCTTAACAAGCTCCGTGCCGGAATTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193364498|gb|FK333539.1|FK333539
EST:     AAATCTCGAGTATAAATGCTATAGTTAAAGTCTTAGAGTTGGCTTTGAAG                         AGACAAAGATCTTTATTGATTATTGCCGAGGA
genomic: AAATCTCTAGTATAAATGCTATAGTTAAAGTCTTAGAGTTGGCTTTGAAGgtgagcagtg ... atatctccagAGACAAAGACCTTTATTGATTATTGCCGAGGA
EST: gi|19268755|gb|BM885011.1|BM885011
EST:     AGTCTTAGAGTTGGCTTTGAAG                         AGACAAAGACCTTTATTGATTATTGCCGAGGATGTGGAAAGTGATGCACTT
genomic: AGTCTTAGAGTTGGCTTTGAAGgtgagcagtg ... atatctccagAGACAAAGACCTTTATTGATTATTGCCGAGGATGTGGAAAGTGATGCACTT
EST: gi|207796276|gb|GD771879.1|GD771879
EST:     AAATCTCTAGTATAAATGCTATAGTTAAAGTCTTAGAGTTGGCTTTGAAG                         AGACAAAGACCTTTATTGATTATTGCCGAGGATGTGGAAAGTGATGCACTT
genomic: AAATCTCTAGTATAAATGCTATAGTTAAAGTCTTAGAGTTGGCTTTGAAGgtgagcagtg ... atatctccagAGACAAAGACCTTTATTGATTATTGCCGAGGATGTGGAAAGTGATGCACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgcatttgacttttaaaataattgatatttgctgacacctacatatctccagAGACAAAGACCTTTATTGATTATTGCCGAGGATGTGGAAAGTGATGCACTTGCAACTCTTATTCTAAATAAGCTTCGGGCCGGAATTAAG
                                tgctgac  putative branch site (score: 2)
                                              tatctcc  putative PPT
      atttgacttttaaaat  TA-rich tract