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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttgttgttattgtcagattaccttcctataaatcaaatgcccaaaacatcatgtgaatgttgtgtgtgtatatgtgtattatttagtcgctccctggtttggttgtttttttagtttcggtttaaatcattaaatttgatatttccgtatctaaacttttttttttccctgaaaaaatattgcagGCTTTGGATCGAATGGGCCATGTGGATGAAATTGTTAATGATCCTGA

Basic information

species Glycine max
transcript GLYMA20G16170.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208145586|gb|GD942707.1|GD942707
EST:     AGTTCCGTTATAATGCGAAGAGGGCATCACTTGTTCAATCTAGAATCAAG                         GCTTTGGATCGAATGGGCCATGTGGATGAAATTGTTAATGATCCTGA
genomic: AGTTCCGTTATAATGCGAAGAGGGCATCACTTGTTCAATCTAGAATCAAGgtacttgttg ... aatattgcagGCTTTGGATCGAATGGGCCATGTGGATGAAATTGTTAATGATCCTGA
EST: gi|193655966|gb|FK606638.1|FK606638
EST:     AGTTCCGTTATAATGCGAAGAGGGCATCACTTGTTCAATCTAGAATCAAG                         GCTTTGGATCGAATGGGCCATGTGGATGAAATTGTTAATGATCCTGA
genomic: AGTTCCGTTATAATGCGAAGAGGGCATCACTTGTTCAATCTAGAATCAAGgtacttgttg ... aatattgcagGCTTTGGATCGAATGGGCCATGTGGATGAAATTGTTAATGATCCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaatttgatatttccgtatctaaacttttttttttccctgaaaaaatattgcagGCTTTGGATCGAATGGGCCATGTGGATGAAATTGTTAATGATCCTGA
                  atctaaa  putative branch site (score: 3)
                 tatctaaacttttttt  TA-rich tract