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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgttatattcagtataattatcaattttactctgcatgcctttttagtggtaaagtttttcctgaattggttaatatctgtttcagGTTAAAAGAGCTTACAACTCGGCCAGCAGCAGTTGAGCATGCTCATAAGTACATTGATGAGTTGAAACAG

Basic information

species Glycine max
transcript GLYMA20G16070.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401588|gb|EV271402.1|EV271402
EST:     CAAGAGCATCTAGATCAGTTAAAAGCTGTTGGAGATCCAATTTTCTTCAG                         GTTAAAAGAGCTTACAACTCGGCCAGCAGCAGTTGAGCATGCTCATAAGTA
genomic: CAAGAGCATCTAGATCAGTTAAAAGCTGTTGGAGATCCAATTTTCTTCAGgtctgttata ... tctgtttcagGTTAAAAGAGCTTACAACTCGGCCAGCAGCAGTTGAGCATGCTCATAAGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcatgcctttttagtggtaaagtttttcctgaattggttaatatctgtttcagGTTAAAAGAGCTTACAACTCGGCCAGCAGCAGTTGAGCATGCTCATAAGTACATTGATGAGTTGAAACAG
                                     ggttaat  putative branch site (score: 4)
                                             tctgtttc  CT-rich tract
                   taaagttttt  TA-rich tract