1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...acttttaattcttatgacctttagtaaaattttgtaatactgttggttgtgtactataaatgtgctaatactaacttttgtgtttgggccaatatgacagGCTTTAATACTTGCTCGAATACTTGGCCATCAAATTAATCTGGATAGCATTCAG
species | Glycine max |
transcript | GLYMA20G11950.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATCCACGTGATGACCTTGGTGGAATGGACGTCGCTAGAAAG GCTTTAATACTTGCTCGAATACTTGGCCATCAAATTAATCTGGATAGCATTEST: gi|192305169|gb|FG997491.1|FG997491
genomic: ATCCACGTGATGACCTTGGTGGAATGGACGTCGCTAGAAAGgttcaatgct ... aatatgacagGCTTTAATACTTGCTCGAATACTTGGCCATCAAATTAATCTGGATAGCATT
EST: AATGGACGTCGCTAGAAAG GCTTTAATACTTGCTCGAATACTTGGCCATCAAATTAATCTGGATAGCATTEST: gi|298178813|gb|HO024548.1|HO024548
genomic: AATGGACGTCGCTAGAAAGgttcaatgct ... aatatgacagGCTTTAATACTTGCTCGAATACTTGGCCATCAAATTAATCTGGATAGCATT
EST: ATCCACGTGATGACCTTGGTGGAATGGACGTCGCTAGAAAG GCTTTAATACTTGCTCGAATACTTGGCCATCAAATTAATCTGGATAGCATTEST: gi|18040511|gb|BM308805.1|BM308805
genomic: ATCCACGTGATGACCTTGGTGGAATGGACGTCGCTAGAAAGgttcaatgct ... aatatgacagGCTTTAATACTTGCTCGAATACTTGGCCATCAAATTAATCTGGATAGCATT
EST: ATCCACGTGATGACCTTGGTGGAATGGACGTCGCTAGAAAG GCTTTAATACTTGCTCGAATACTTGGCCATCAAATTAATCTGGATAGCATTEST: gi|22930193|gb|BU547332.1|BU547332
genomic: ATCCACGTGATGACCTTGGTGGAATGGACGTCGCTAGAAAGgttcaatgct ... aatatgacagGCTTTAATACTTGCTCGAATACTTGGCCATCAAATTAATCTGGATAGCATT
EST: AATGGACGTCGCTAGAAAG GCTTTAATACTTGCTCGAATACTTGGCCATCAAATTAATCTGGATAGCATT
genomic: AATGGACGTCGCTAGAAAGgttcaatgct ... aatatgacagGCTTTAATACTTGCTCGAATACTTGGCCATCAAATTAATCTGGATAGCATT
gttgtgtactataaatgtgctaatactaacttttgtgtttgggccaatatgacagGCTTTAATACTTGCTCGAATACTTGGCCATCAAATTAATCTGGATAGCATTCAG
tactaac putative branch site (score: 0)
taatactaactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttttaattcttatgacctttagtaaaattttgtaatactgttggttgtgtactataaatgtgctaatactaacttttgtgtttgggccaatatgacagGCTTTAATACTTGCTCGAATACTTGGCCATCAAATTAATCTGGATAGCATTCAG
- - - - - - - - - - - - - - - - - - - - - - ggttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtttggg