1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttaatccagaatatgaatattctttataaaaactttctattggttactcaaatatgatctttgtactcatattgttttctgttcattctgttgtggtcagGAACTGTAGTTCCAATGCTTTTGGCTGTAATGGCTGTTGTGCCAGCAGAGAAGCTTGCTGTCCACTTCCATGACACTTATGGGCAATCCCTTCCAAATAT
species | Glycine max |
transcript | GLYMA20G08360.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGGTTGCTTTGAAATCTCACTTGGGGACACAATTGGAGTTGGTACTCCCG GAACTGTAGTTCCAATGCTTTTGGCTGTAATGGCTGTTGTGCCAGEST: gi|26048182|gb|CA784746.1|CA784746
genomic: GGGTTGCTTTGAAATCTCACTTGGGGACACAATTGGAGTTGGTACTCCCGgtaatgaatt ... ttgtggtcagGAACTGTAGTTCCAATGCTTTTGGCTGTAATGGCTGTTGTGCCAG
EST: GGGTTGCTTTGAAATCTCACTTGGGGACACAATTGGAGTTGGTACTCCCG GAACTGTAGTTCCAATGCTTTTGGCTGTAATGGCTGTTGTGCCAGCAGAGAEST: gi|20075741|gb|BQ094524.1|BQ094524
genomic: GGGTTGCTTTGAAATCTCACTTGGGGACACAATTGGAGTTGGTACTCCCGgtaatgaatt ... ttgtggtcagGAACTGTAGTTCCAATGCTTTTGGCTGTAATGGCTGTTGTGCCAGCAGAGA
EST: GGGTTGCTTTGAAATCTCACTTGGGGACACAATTGGAGTTGGTACTCCCG GAACTGTAGTTCCAATGCTTTTGGCTGTAATGGCTGTTGTGCCAGCAGAGA
genomic: GGGTTGCTTTGAAATCTCACTTGGGGACACAATTGGAGTTGGTACTCCCGgtaatgaatt ... ttgtggtcagGAACTGTAGTTCCAATGCTTTTGGCTGTAATGGCTGTTGTGCCAGCAGAGA
actcaaatatgatctttgtactcatattgttttctgttcattctgttgtggtcagGAACTGTAGTTCCAATGCTTTTGGCTGTAATGGCTGTTGTGCCAGCAGAGAAGCTTGCTGTCCACTTCCATGACACTTATGGGCAATCCCTTCCAAATAT
ttctgtt CT-rich tract
atattgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaatccagaatatgaatattctttataaaaactttctattggttactcaaatatgatctttgtactcatattgttttctgttcattctgttgtggtcagGAACTGTAGTTCCAATGCTTTTGGCTGTAATGGCTGTTGTGCCAGCAGAGAAGCTTGCTGTCCACTTCCATGACACTTATGGGCAATCCCTTCCAAATAT
- - - - - - - - - - - - -ataaaaa
- - - - - - - - - - - - - - - - - - ctattgg
- - - - - - - - - - - - - - - - - - - - - - -actcaaa