1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tatctcctttttcaaattatctctcttgtatttctatcttatttctctcctctaaaccaaacacaccattaagataacaacttaactaattattttacagATATTAAGGTGTGGACCACCTCCCATGAACAAGGCTATGGCTGCTAATCTTGAAGCTCTTGGATACAGTCCCCAAATGCAGTTTCAGTTTTAAGTCTTGA
species | Glycine max |
transcript | GLYMA20G05640.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTAAGGAAATGATCCAAACAGATTTCCCTGCACCAGCATCAGATATTAAG ATATTAAGGTGTGGACCACCTCCCATGAACAAGGCTATGGCTGCTAATCTTEST: gi|213601031|gb|DB983706.1|DB983706
genomic: CTAAGGAAATGATCCAAACAGATTTCCCTGCACCAGCATCAGATATTAAGgtaactttcg ... tattttacagATATTAAGGTGTGGACCACCTCCCATGAACAAGGCTATGGCTGCTAATCTT
EST: CTAAGGAAATGATCCAAACAGATTTCCCTGCACCAGCATCAGATATTAAG ATATTAAGGTGTGGACCACCTCCCATGAACAAGGCTATGGCTGCTAATCTTEST: gi|192309127|gb|FG999074.1|FG999074
genomic: CTAAGGAAATGATCCAAACAGATTTCCCTGCACCAGCATCAGATATTAAGgtaactttcg ... tattttacagATATTAAGGTGTGGACCACCTCCCATGAACAAGGCTATGGCTGCTAATCTT
EST: CTAAGGAAATGATCCAAACAGATTTCCCTGCACCAGCATCAGATATTAAG ATATTAAGGTGTGGACCACCTCCCATGAACAAGGCTATGGCTGCTAATCTTEST: gi|151412854|gb|EV282666.1|EV282666
genomic: CTAAGGAAATGATCCAAACAGATTTCCCTGCACCAGCATCAGATATTAAGgtaactttcg ... tattttacagATATTAAGGTGTGGACCACCTCCCATGAACAAGGCTATGGCTGCTAATCTT
EST: CTAAAGAAATGATCCAAACAGATTTCCCTGCACCAGCATCAGATATTA-G ATATTAAG-TGTGGACCAC-TCCCATGA
genomic: CTAAGGAAATGATCCAAACAGATTTCCCTGCACCAGCATCAGATATTAAGgtaactttcg ... tattttacagATATTAAGGTGTGGACCACCTCCCATGA
tctcctctaaaccaaacacaccattaagataacaacttaactaattattttacagATATTAAGGTGTGGACCACCTCCCATGAACAAGGCTATGGCTGCTAATCTTGAAGCTCTTGGATACAGTCCCCAAATGCAGTTTCAGTTTTAAGTCTTGA
aactaat putative branch site (score: 2)
ttatttt CT-rich tract
attaagataacaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatctcctttttcaaattatctctcttgtatttctatcttatttctctcctctaaaccaaacacaccattaagataacaacttaactaattattttacagATATTAAGGTGTGGACCACCTCCCATGAACAAGGCTATGGCTGCTAATCTTGAAGCTCTTGGATACAGTCCCCAAATGCAGTTTCAGTTTTAAGTCTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacacc