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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctcaccatcttgaatctggttactttcttgtctaagttgcttagaaagacatatttggaagatcctttcagatggtcattattcaaatttcttgcacagGTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAAGGGCAATTTGTTCGCCAAGTACACGATGATCATCCAGTAGCAGATGTGG

Basic information

species Glycine max
transcript GLYMA19G44970.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31475992|gb|CD418020.1|CD418020
EST:     CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAG                         GTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA
genomic: CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAGgtattgcaac ... tcttgcacagGTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA
EST: gi|22540093|gb|BU089936.1|BU089936
EST:     CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAG                         GTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA
genomic: CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAGgtattgcaac ... tcttgcacagGTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA
EST: gi|31308720|gb|CD393923.1|CD393923
EST:     CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAG                         GTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA
genomic: CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAGgtattgcaac ... tcttgcacagGTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA
EST: gi|193325835|gb|FK290274.1|FK290274
EST:     AAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAG                         GTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA
genomic: AAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAGgtattgcaac ... tcttgcacagGTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA
EST: gi|193525040|gb|FK479719.1|FK479719
EST:     CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAG                         GTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA
genomic: CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAGgtattgcaac ... tcttgcacagGTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA
EST: gi|15287121|gb|BI471012.1|BI471012
EST:     CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAG                         GTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA
genomic: CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAGgtattgcaac ... tcttgcacagGTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA
EST: gi|18734328|gb|BM528119.1|BM528119
EST:     CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAG                         GTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA
genomic: CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAGgtattgcaac ... tcttgcacagGTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA
EST: gi|19271144|gb|BM887400.1|BM887400
EST:     CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAG                         GTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA
genomic: CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAGgtattgcaac ... tcttgcacagGTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA
EST: gi|193581145|gb|FK533580.1|FK533580
EST:     CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAG                         GTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA
genomic: CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAGgtattgcaac ... tcttgcacagGTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagacatatttggaagatcctttcagatggtcattattcaaatttcttgcacagGTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAAGGGCAATTTGTTCGCCAAGTACACGATGATCATCCAGTAGCAGATGTGG
                                           tttcttgc  CT-rich tract
                                 attattcaaatttctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tctcaccatcttgaatctggttactttcttgtctaagttgcttagaaagacatatttggaagatcctttcagatggtcattattcaaatttcttgcacagGTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAAGGGCAATTTGTTCGCCAAGTACACGATGATCATCCAGTAGCAGATGTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- tcaccat
- - - - - - - -tctggtt
- - - - - - - - - - - - - - - - - - gttgctt
- - - - - - - - - - - - - - - - - - - - - - gaaagac