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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaatatttttcttccacatgcaaattaatttaaagaacatttgatttaattttctccaaataattagcaaatccaatatatcaattatatactcacttccttttgcaatattaattaattagGACCCAAAAGTAGGGAATTGGTGGATGAGTTTTGGTGATGGCACATTGGTAGGGTATTGGCCAGAAGAGTTATTCACACACTTGGCCACACACGCCACCA

Basic information

species Glycine max
transcript GLYMA19G43900.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G43900.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G18460.1 (Arabidopsis thaliana), 3'ss of exon 6
gttaatatttttcttccacatgcaaattaatttaaagaacatttgatttaattttctccaaataattagcaaatccaatatatcaattatatactcacttccttttgcaatattaattaattagGACCCAAAAGTAGGGAATTGGTGGATGAGTTTTGGTGATGGCACATTGGTAGGGTATTGGCCAGAAGAGTTATTCACACACTTGGCCACACACGCCACCA
                     |   |  |  |  || |||  | |    |   | || | ||||   |   ||| || |   || |  | | | |  ||   || |    | |    |    |||| || ||| | ||||||||||||||| |||| || ||| ||||| | || |||||||||||||  ||| ||||||| |||||||||   ||||| || |
---------------------gtggacgacatagaataacggt-gtaaaagcatgctactaata-caaaagaattcatttcttctaagaaaga-tgtctaaattatattctttgggatttgcagGATCCGAAAATGGGGAATTGGTGGATGGGTTTAGGGGATAGCACACTAGTCGGGTATTGGCCAGCCGAGCTATTCACGCACTTGGCCGACCACGCGACTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17021175|gb|BM092209.1|BM092209
EST:     TCTCATCTTATGAATCCAACCAATATGACATCACCATCCTCATTTGGAAG                         GACCCAAAAGTAGGGAATTGGTGGATGAGTTTTGGTGATGGCACATTGGTA
genomic: TCTCATCTTATGAATCCAACCAATATGACATCACCATCCTCATTTGGAAGgttaatattt ... aattaattagGACCCAAAAGTAGGGAATTGGTGGATGAGTTTTGGTGATGGCACATTGGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaatccaatatatcaattatatactcacttccttttgcaatattaattaattagGACCCAAAAGTAGGGAATTGGTGGATGAGTTTTGGTGATGGCACATTGGTAGGGTATTGGCCAGAAGAGTTATTCACACACTTGGCCACACACGCCACCA
                                 ttttgcaatattaatt  TA-rich tract