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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgttcattttcaaattggaaaggatattggtgttgtatcttcccaaccccctaagcagggagacttacatagttacattcatgttcattctttcttaccagTTTGTTGTAGTCACTCAACCCCTGAATTCTTTAGCATTTGTTTTTTATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGGTGA

Basic information

species Glycine max
transcript GLYMA19G43330.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G43330.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv06s0004g02140.t01 (Vitis vinifera), 3'ss of exon 10
gtaattgttcattttcaaattggaaaggatattggtgttgtatcttcccaaccccctaagcagggagacttacatagttacattcatgttcattctttcttaccagTTTGTTGTAGTCACTCAACCCCTGAATTCTTTAGCATTTGTTTTTTATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGGTGA
|||     || |      |    |||  | |   |   | || || |  ||  |  |   ||  |    | |  |  | ||| |    ||| || |||| || |||||||||| ||| ||||||||  | || ||| | || ||||||||| |||| ||||||||||| |||||||||||||||||||| || |  ||||||    
gtatcccctcttgactgtagaccaaaaaacacaagatctctacct-cttaattctat---cattgtccttgaattcatgacaat----ttctttgtttcatatcagTTTGTTGCAGTTACTCAACCTATCAACTCTCTGGCCTTTGTTTTTGATGGGGTCAACTTTGGTGCATCTGATTTTGCATATTCTGCATATTCCATG----


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccccctaagcagggagacttacatagttacattcatgttcattctttcttaccagTTTGTTGTAGTCACTCAACCCCTGAATTCTTTAGCATTTGTTTTTTATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGGTGA
               gacttac  putative branch site (score: 2)
                                     ttcattctttcttacc  putative PPT
                  ttacata  TA-rich tract