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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctgactttgtcttcgtgtagctagggtctttcattctttctattgtaatgacgtgcacatgatttactaatgatcataacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG

Basic information

species Glycine max
transcript GLYMA19G42150.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27425324|gb|CA936844.1|CA936844
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATT
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgactt ... aacttgacagGCATCATATCTAAACCTTCCTGATT
EST: gi|9203355|gb|BE329641.1|BE329641
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgactt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
EST: gi|7234639|gb|AW569975.1|AW569975
EST:     TAACAAGCATTATTCGGCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATTCT
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgactt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCT
EST: gi|151412172|gb|EV281984.1|EV281984
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         -CATCATATCTAAAC
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgactt ... aacttgacagGCATCATATCTAAAC
EST: gi|14516434|gb|BI095106.1|BI095106
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATTCT
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgactt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctttctattgtaatgacgtgcacatgatttactaatgatcataacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
                             atttactaat  TA-rich tract