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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttctataatttttgaattgtgtaatatctgactactaatatcctgacataaacataactacatatttccattgagcagTTGGTTCTAATAATGGTGAAATTACACTTTGGGAGCTTGGGTTGCGAGACAGGTTGGTCTCAAAGCCATTCAAGATATGGGATATCTCAGCATGCTCATT

Basic information

species Glycine max
transcript GLYMA19G41840.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G41840.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os01g15020.1 (Oryza sativa), 3'ss of exon 8
-----------------------------------------------------gtaatttc-----tataatttttgaattgtgtaatatctgactactaatatcctgacataaacataact--------acatatttccattgagcagTTGGTTCTAATAATGGTGAAATTACACTTTGGGAGCTTGGGTTGCGAGACAGGTTGGTCTCAAAGCCATTCAAGATATGGGATATCTCAGCATGCTCATT
                                                     |||| | |     | | ||| || ||   || |||   ||| ||| | |   |  |   | | || | |        ||   | |   || | ||||||| ||||  |||||||||||||||||||||||| ||||  |||| || ||  || | |||||||| ||||| || ||||| ||   ||| || |||  
gtacaatcaagctctttatgttattaaaatctatttaaaaaatatgtgcaatagtaagtacagaagtctgattctttaagcatg-aatgattgaatacaacttagccaaacgatatatcattttcttatcacgcttattactttatcagTTGGATCTACCAATGGTGAAATTACACTTTGGGAGGTTGGTATGCGTGAGAGACTGTTTTCAAAGCCCTTCAAAATTTGGGACATTCAAGCTTGTTCACC

upper sequence: GLYMA19G41840.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G27030.1 (Arabidopsis thaliana), 3'ss of exon 8
---------------gtaatttctataatttttgaattgtgt--aatatctgactactaatatc-ctgacataaacat--aactacatatttccat-tgagcagTTGGTTCTAATAATGGTGAAATTACACTTTGGGAGCTTGGGTTGCGAGACAGGTTGGTCTCAAAGCCATTCAAGATATGGGATATCTCAGCATGCTCATT
                 ||    || || || | || |||||   |  |   | | ||  |||| || |  |     |   | |     |||  ||   | ||||||| |||   |  || ||||| ||| | ||||| ||||     ||||| ||| |||| |||| ||||||||||||||||||||| ||    ||||||  
gtatgggggtttgaaaaaaagaatacaaattctaaactgtgtttgaagttatatttctgttatctcttatttggctttctgaatgaccgtttgaatgccatcagTTGGATCTGCGACGGGAGAAATCACATTGTGGGAACTTGCCGCTCGAGAGAGGCTGGTTTCAAGGCCATTCAAGATATGGGATATGTCTAATTGCTCACA

upper sequence: GLYMA19G41840.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 8
-----------------------------------------gtaatttctataatttttga-attgtgtaat-atctgactactaatatcctgacataaacataactacatatttccattgagcagTTGGTTCTAATAATGGTGAAATTACACTTTGGGAGCTTGGGTTGCGAGACAGGTTGGTCTCAAAGCCATTCAAGATATGGGATATCTCAGCATGCTCATT
                                          ||||||| | ||  |     |  || || |  | | | | |   | |  || |||   | |||||  |    | | ||||||||||||||||  ||||||||| ||||||||||||||  |||  |||||||| ||||||||  |||| | |||||||||||||||  |  |||| || |||||
gtatgaacttctgttttctctgtatcttagtgattaaagagctaatttccaaaagatagattacagtctagttgttttattcccttttttttggcattttc-taactttaagaatactttgagcagTTGGTTCTGGTAATGGTGATATTACACTTTGGGAAGTTGCATTGCGAGAGAGGTTGGTTACAAAACAATTCAAGATATGGGACGTGACAGCTTGTTCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatctgactactaatatcctgacataaacataactacatatttccattgagcagTTGGTTCTAATAATGGTGAAATTACACTTTGGGAGCTTGGGTTGCGAGACAGGTTGGTCTCAAAGCCATTCAAGATATGGGATATCTCAGCATGCTCATT
                                         tttccatt  CT-rich tract
                              ataactacatattt  TA-rich tract