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gtaggtggttgttgatgggagctccgttgattctgtggtttaatatatgtaaaaatgaaatttgtttttgttttccagCCCTTGTTCCCCGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATCATCAAG
species | Glycine max |
transcript | GLYMA19G41420.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGACGTTTGGTCAGTTGGTTGTGTATTGGCTGAGCTTATGCTTGGACAG CCCTTGTTCCCTGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATCATCAAGEST: gi|9985319|gb|BE659427.1|BE659427
genomic: TTGACGTTTGGTCAGTTGGTTGTGTATTGGCTGAGCTTATGCTTGGACAGgtaggtggtt ... tgttttccagCCCTTGTTCCCCGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATCATCAAG
EST: TTGACGTTTGGTCAGTTGGTTGTGTATTGGCTGAGCTTATGC-TNNACAG NEST: gi|9985319|gb|BE659427.1|BE659427
genomic: TTGACGTTTGGTCAGTTGGTTGTGTATTGGCTGAGCTTATGCTTGGACAGgtaggtggtt ... tgttttccag-
EST: TTGACGTTTGGTCAGTTGGTTGTGTATTGGCTGAGCTTATGC-TNNACAG NEST: gi|193616610|gb|FK568242.1|FK568242
genomic: TTGACGTTTGGTCAGTTGGTTGTGTATTGGCTGAGCTTATGCTTGGACAGgtaggtggtt ... tgttttccag-
EST: TTGGTCAGTTGGTTGTGTATTGGCTGAGCTTATGCTTGGACAG CCCTTGTTCCCCGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATCATCAAGEST: gi|6963904|gb|AW432597.1|AW432597
genomic: TTGGTCAGTTGGTTGTGTATTGGCTGAGCTTATGCTTGGACAGgtaggtggtt ... tgttttccagCCCTTGTTCCCCGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATCATCAAG
EST: TTGACGTTTGGTCAGTTGGTTGTGTATTGGCTGAGCTTATGCTTGGACAG CCCTTGTTCCCCGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATCATCAAG
genomic: TTGACGTTTGGTCAGTTGGTTGTGTATTGGCTGAGCTTATGCTTGGACAGgtaggtggtt ... tgttttccagCCCTTGTTCCCCGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATCATCAAG
ccgttgattctgtggtttaatatatgtaaaaatgaaatttgtttttgttttccagCCCTTGTTCCCCGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATCATCAAG
gtttaat putative branch site (score: 4)
tttgtttttgttttcc putative PPT
tttaatatatgtaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtggttgttgatgggagctccgttgattctgtggtttaatatatgtaaaaatgaaatttgtttttgttttccagCCCTTGTTCCCCGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATCATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA